Results 81 - 100 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24049 | 5' | -58.5 | NC_005262.1 | + | 48129 | 0.68 | 0.48624 |
Target: 5'- ----gACGCGCuugCGGGCGcgGCCGGCu -3' miRNA: 3'- gagaaUGCGCG---GCCCGUugUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 48165 | 0.69 | 0.438082 |
Target: 5'- gUCg---GCGCCGGGCGGCucguCgCGGCa -3' miRNA: 3'- gAGaaugCGCGGCCCGUUGu---G-GCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 48320 | 0.74 | 0.220675 |
Target: 5'- cCUUgUACGUGUCGGGCAugACCuGCa -3' miRNA: 3'- -GAGaAUGCGCGGCCCGUugUGGcCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 49061 | 0.67 | 0.516311 |
Target: 5'- uUCUUGaGCGCCGccuGCAuCugCGGCGu -3' miRNA: 3'- gAGAAUgCGCGGCc--CGUuGugGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 49714 | 0.83 | 0.048225 |
Target: 5'- ----gGCGUGCCGGGCGGCgaACCGGCGg -3' miRNA: 3'- gagaaUGCGCGGCCCGUUG--UGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 49840 | 0.69 | 0.410531 |
Target: 5'- cCUCgg--GCG-CGGGCGcCGCCGGCGu -3' miRNA: 3'- -GAGaaugCGCgGCCCGUuGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 50093 | 0.72 | 0.290096 |
Target: 5'- uUCggUGgGCGCCGGcGCGGCuucAUCGGCGg -3' miRNA: 3'- gAGa-AUgCGCGGCC-CGUUG---UGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 50411 | 0.73 | 0.226351 |
Target: 5'- gUCcUGCGCGgCGGGCGcuGCGgCCGGCu -3' miRNA: 3'- gAGaAUGCGCgGCCCGU--UGU-GGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 50961 | 0.66 | 0.610174 |
Target: 5'- ----aGCGCGCCGugcgauugcgucGGCAcCugCGGCa -3' miRNA: 3'- gagaaUGCGCGGC------------CCGUuGugGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 51121 | 0.68 | 0.496175 |
Target: 5'- gCUCg-ACGCGCCGGuCGACAa-GGCGc -3' miRNA: 3'- -GAGaaUGCGCGGCCcGUUGUggCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 51241 | 0.71 | 0.309562 |
Target: 5'- cCUCaUGCGCGCCGgcuacgguaaggacGGCAAgcugaaccuCACCGGCc -3' miRNA: 3'- -GAGaAUGCGCGGC--------------CCGUU---------GUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 51361 | 0.74 | 0.204371 |
Target: 5'- gCUCggcacCGCGCCGuccGCGACGCCGGCc -3' miRNA: 3'- -GAGaau--GCGCGGCc--CGUUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 51421 | 0.69 | 0.419596 |
Target: 5'- gCUCggcgGCGCGCgcgaGGGCGAUACCGuCa -3' miRNA: 3'- -GAGaa--UGCGCGg---CCCGUUGUGGCcGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 52603 | 0.71 | 0.334685 |
Target: 5'- ----cGCGUaaaGCCGGGCGagcugaagcGCACCGGCu -3' miRNA: 3'- gagaaUGCG---CGGCCCGU---------UGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 52941 | 0.76 | 0.161604 |
Target: 5'- ---cUGCGcCGCCuGGGCuuCGCCGGCGg -3' miRNA: 3'- gagaAUGC-GCGG-CCCGuuGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 53430 | 0.66 | 0.599572 |
Target: 5'- -aCggACGUGCUGuuccuccagaaGcGCGGCGCCGGCGu -3' miRNA: 3'- gaGaaUGCGCGGC-----------C-CGUUGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 53772 | 0.66 | 0.578453 |
Target: 5'- ----gGCGgGCUGuacgucGGCGAUACCGGCa -3' miRNA: 3'- gagaaUGCgCGGC------CCGUUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 53790 | 0.68 | 0.476401 |
Target: 5'- cCUUcgACGCgGCCGGGUucugcGCGCCcGGCu -3' miRNA: 3'- -GAGaaUGCG-CGGCCCGu----UGUGG-CCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 53811 | 0.68 | 0.466662 |
Target: 5'- gUCgacaGCG-GCaCGGGCAucgagcugacGCACCGGCGc -3' miRNA: 3'- gAGaa--UGCgCG-GCCCGU----------UGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 54047 | 0.69 | 0.42878 |
Target: 5'- aUCga--GCGCaCGGGCGACGaCGGCa -3' miRNA: 3'- gAGaaugCGCG-GCCCGUUGUgGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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