miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 62991 0.69 0.42878
Target:  5'- --aUUGCGCGCCagcucgucGGC-GCGCUGGCGg -3'
miRNA:   3'- gagAAUGCGCGGc-------CCGuUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 61913 0.7 0.36709
Target:  5'- ---aUACGcCGCaGGGCuGCGCCGGCu -3'
miRNA:   3'- gagaAUGC-GCGgCCCGuUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 61794 0.68 0.48624
Target:  5'- ----aGCGCGCCGaGCgAAC-CCGGCGc -3'
miRNA:   3'- gagaaUGCGCGGCcCG-UUGuGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 61701 0.75 0.184265
Target:  5'- aUCaggGCGCGCCGGGUu-CGCuCGGCGc -3'
miRNA:   3'- gAGaa-UGCGCGGCCCGuuGUG-GCCGC- -5'
24049 5' -58.5 NC_005262.1 + 61236 0.66 0.588996
Target:  5'- ---aUACGUGUgGcGCAccuACACCGGCGg -3'
miRNA:   3'- gagaAUGCGCGgCcCGU---UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 61141 0.7 0.384083
Target:  5'- ----gACGCGCUGGcGCAGCAgauCgCGGCGg -3'
miRNA:   3'- gagaaUGCGCGGCC-CGUUGU---G-GCCGC- -5'
24049 5' -58.5 NC_005262.1 + 60685 0.66 0.588996
Target:  5'- -gCUgGCGaCGCUGGGCuucuuCGCgGGCGc -3'
miRNA:   3'- gaGAaUGC-GCGGCCCGuu---GUGgCCGC- -5'
24049 5' -58.5 NC_005262.1 + 60595 0.73 0.244124
Target:  5'- gCUCUUGgcggccUGCGCCGcGCGGC-CCGGCGu -3'
miRNA:   3'- -GAGAAU------GCGCGGCcCGUUGuGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 60178 0.66 0.578453
Target:  5'- ----gGCGCucgGCCaguGGGCGGCaACCGGCa -3'
miRNA:   3'- gagaaUGCG---CGG---CCCGUUG-UGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 59119 0.69 0.410531
Target:  5'- -aCUacCGCGCCGaGGCGA-ACCGGCc -3'
miRNA:   3'- gaGAauGCGCGGC-CCGUUgUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 58954 0.68 0.447498
Target:  5'- ----aACGCG-CGGaGCuGCGCCGGCGu -3'
miRNA:   3'- gagaaUGCGCgGCC-CGuUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 58896 0.68 0.457026
Target:  5'- -gCUgcCGCGCUGcGCGAUcagGCCGGCGg -3'
miRNA:   3'- gaGAauGCGCGGCcCGUUG---UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 57680 0.73 0.226351
Target:  5'- uUCUcGCGCGCCGGGCGcgGCAa-GGUGc -3'
miRNA:   3'- gAGAaUGCGCGGCCCGU--UGUggCCGC- -5'
24049 5' -58.5 NC_005262.1 + 57515 0.66 0.599572
Target:  5'- uUCagcguCGCGCCGGGCAuCgACC-GCGa -3'
miRNA:   3'- gAGaau--GCGCGGCCCGUuG-UGGcCGC- -5'
24049 5' -58.5 NC_005262.1 + 56518 0.69 0.438082
Target:  5'- aUCUggACGCGCCGuGGUu-C-CCGGCa -3'
miRNA:   3'- gAGAa-UGCGCGGC-CCGuuGuGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 55645 0.66 0.567952
Target:  5'- ----cGCGCGCuCGuGGCcGCGuCCGGCa -3'
miRNA:   3'- gagaaUGCGCG-GC-CCGuUGU-GGCCGc -5'
24049 5' -58.5 NC_005262.1 + 55058 0.67 0.556458
Target:  5'- -----uCGCGaCGGGCAuggaggaGCGCCGGCu -3'
miRNA:   3'- gagaauGCGCgGCCCGU-------UGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 54920 0.67 0.516311
Target:  5'- gCUCgcaccugACGCuGCCGGGCGuguCGCUGcGCu -3'
miRNA:   3'- -GAGaa-----UGCG-CGGCCCGUu--GUGGC-CGc -5'
24049 5' -58.5 NC_005262.1 + 54268 0.68 0.457026
Target:  5'- ----cACGCGCuCGGaCAGgACCGGCGc -3'
miRNA:   3'- gagaaUGCGCG-GCCcGUUgUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 54047 0.69 0.42878
Target:  5'- aUCga--GCGCaCGGGCGACGaCGGCa -3'
miRNA:   3'- gAGaaugCGCG-GCCCGUUGUgGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.