miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 53811 0.68 0.466662
Target:  5'- gUCgacaGCG-GCaCGGGCAucgagcugacGCACCGGCGc -3'
miRNA:   3'- gAGaa--UGCgCG-GCCCGU----------UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 53790 0.68 0.476401
Target:  5'- cCUUcgACGCgGCCGGGUucugcGCGCCcGGCu -3'
miRNA:   3'- -GAGaaUGCG-CGGCCCGu----UGUGG-CCGc -5'
24049 5' -58.5 NC_005262.1 + 53772 0.66 0.578453
Target:  5'- ----gGCGgGCUGuacgucGGCGAUACCGGCa -3'
miRNA:   3'- gagaaUGCgCGGC------CCGUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 53430 0.66 0.599572
Target:  5'- -aCggACGUGCUGuuccuccagaaGcGCGGCGCCGGCGu -3'
miRNA:   3'- gaGaaUGCGCGGC-----------C-CGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 52941 0.76 0.161604
Target:  5'- ---cUGCGcCGCCuGGGCuuCGCCGGCGg -3'
miRNA:   3'- gagaAUGC-GCGG-CCCGuuGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 52603 0.71 0.334685
Target:  5'- ----cGCGUaaaGCCGGGCGagcugaagcGCACCGGCu -3'
miRNA:   3'- gagaaUGCG---CGGCCCGU---------UGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 51421 0.69 0.419596
Target:  5'- gCUCggcgGCGCGCgcgaGGGCGAUACCGuCa -3'
miRNA:   3'- -GAGaa--UGCGCGg---CCCGUUGUGGCcGc -5'
24049 5' -58.5 NC_005262.1 + 51361 0.74 0.204371
Target:  5'- gCUCggcacCGCGCCGuccGCGACGCCGGCc -3'
miRNA:   3'- -GAGaau--GCGCGGCc--CGUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 51241 0.71 0.309562
Target:  5'- cCUCaUGCGCGCCGgcuacgguaaggacGGCAAgcugaaccuCACCGGCc -3'
miRNA:   3'- -GAGaAUGCGCGGC--------------CCGUU---------GUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 51121 0.68 0.496175
Target:  5'- gCUCg-ACGCGCCGGuCGACAa-GGCGc -3'
miRNA:   3'- -GAGaaUGCGCGGCCcGUUGUggCCGC- -5'
24049 5' -58.5 NC_005262.1 + 50961 0.66 0.610174
Target:  5'- ----aGCGCGCCGugcgauugcgucGGCAcCugCGGCa -3'
miRNA:   3'- gagaaUGCGCGGC------------CCGUuGugGCCGc -5'
24049 5' -58.5 NC_005262.1 + 50411 0.73 0.226351
Target:  5'- gUCcUGCGCGgCGGGCGcuGCGgCCGGCu -3'
miRNA:   3'- gAGaAUGCGCgGCCCGU--UGU-GGCCGc -5'
24049 5' -58.5 NC_005262.1 + 50093 0.72 0.290096
Target:  5'- uUCggUGgGCGCCGGcGCGGCuucAUCGGCGg -3'
miRNA:   3'- gAGa-AUgCGCGGCC-CGUUG---UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 49840 0.69 0.410531
Target:  5'- cCUCgg--GCG-CGGGCGcCGCCGGCGu -3'
miRNA:   3'- -GAGaaugCGCgGCCCGUuGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 49714 0.83 0.048225
Target:  5'- ----gGCGUGCCGGGCGGCgaACCGGCGg -3'
miRNA:   3'- gagaaUGCGCGGCCCGUUG--UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 49061 0.67 0.516311
Target:  5'- uUCUUGaGCGCCGccuGCAuCugCGGCGu -3'
miRNA:   3'- gAGAAUgCGCGGCc--CGUuGugGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 48320 0.74 0.220675
Target:  5'- cCUUgUACGUGUCGGGCAugACCuGCa -3'
miRNA:   3'- -GAGaAUGCGCGGCCCGUugUGGcCGc -5'
24049 5' -58.5 NC_005262.1 + 48165 0.69 0.438082
Target:  5'- gUCg---GCGCCGGGCGGCucguCgCGGCa -3'
miRNA:   3'- gAGaaugCGCGGCCCGUUGu---G-GCCGc -5'
24049 5' -58.5 NC_005262.1 + 48129 0.68 0.48624
Target:  5'- ----gACGCGCuugCGGGCGcgGCCGGCu -3'
miRNA:   3'- gagaaUGCGCG---GCCCGUugUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 47843 0.66 0.567952
Target:  5'- ----cGCGCgauGCCGGGUucgccGCgGCCGGCGg -3'
miRNA:   3'- gagaaUGCG---CGGCCCGu----UG-UGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.