Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24049 | 5' | -58.5 | NC_005262.1 | + | 47740 | 0.69 | 0.410531 |
Target: 5'- aUCUggUGCGcCGCCGGccGCGGCGaacCCGGCa -3' miRNA: 3'- gAGA--AUGC-GCGGCC--CGUUGU---GGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 46906 | 0.68 | 0.496175 |
Target: 5'- -aCU--CGCGCaGGGCGAU-CCGGCGa -3' miRNA: 3'- gaGAauGCGCGgCCCGUUGuGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 46812 | 0.66 | 0.610174 |
Target: 5'- aUCcgguCGUGCCGGauuGCGCCGGCu -3' miRNA: 3'- gAGaau-GCGCGGCCcguUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 46779 | 0.71 | 0.311786 |
Target: 5'- ---cUGCGCGCgCGGcGCugacuGCAUCGGCGg -3' miRNA: 3'- gagaAUGCGCG-GCC-CGu----UGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 46704 | 0.68 | 0.447498 |
Target: 5'- -cCUUcauCGCGUCGGGCGGgaucuguggcguCugCGGCGa -3' miRNA: 3'- gaGAAu--GCGCGGCCCGUU------------GugGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 46642 | 0.68 | 0.496175 |
Target: 5'- gUCguggGCGuCGCgGGaGCGGCGgCCGGCGn -3' miRNA: 3'- gAGaa--UGC-GCGgCC-CGUUGU-GGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 46611 | 0.69 | 0.40159 |
Target: 5'- -----cCGCGCUGGGCugcuGCGCgGGCa -3' miRNA: 3'- gagaauGCGCGGCCCGu---UGUGgCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 46453 | 0.66 | 0.578453 |
Target: 5'- -----cCGCGCCGGacccgaauGCcGCGCCGGCc -3' miRNA: 3'- gagaauGCGCGGCC--------CGuUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 45206 | 0.72 | 0.289394 |
Target: 5'- cCUCgcagGCGgcaugucCGCCGGGCucggccugAACGCCGGCa -3' miRNA: 3'- -GAGaa--UGC-------GCGGCCCG--------UUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 44976 | 0.68 | 0.466662 |
Target: 5'- gUCUUGCaGCgGCUGGaacacauccuuGUAGCGCUGGCGg -3' miRNA: 3'- gAGAAUG-CG-CGGCC-----------CGUUGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 44764 | 0.69 | 0.392773 |
Target: 5'- uUCggauCGgGCgCGGGCGcguCGCCGGCGu -3' miRNA: 3'- gAGaau-GCgCG-GCCCGUu--GUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 44703 | 0.68 | 0.496175 |
Target: 5'- -cCUUGCGCG-CGGGCuucucGCGCuCGaGCGg -3' miRNA: 3'- gaGAAUGCGCgGCCCGu----UGUG-GC-CGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 44157 | 0.68 | 0.48624 |
Target: 5'- ----cGCGCGCgauCGGGCAggagcGCGgCGGCGa -3' miRNA: 3'- gagaaUGCGCG---GCCCGU-----UGUgGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 43845 | 0.68 | 0.466662 |
Target: 5'- -----cCGCGCgCGGcGguGCGCCGGCa -3' miRNA: 3'- gagaauGCGCG-GCC-CguUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 43069 | 0.67 | 0.510235 |
Target: 5'- ----cGCGCGCCGcGGCAGCuucaucaucgaccugACCGGgCa -3' miRNA: 3'- gagaaUGCGCGGC-CCGUUG---------------UGGCC-Gc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 42884 | 0.67 | 0.5575 |
Target: 5'- ------gGCGUCGGGCGacGCGCCGGa- -3' miRNA: 3'- gagaaugCGCGGCCCGU--UGUGGCCgc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 42239 | 0.66 | 0.588996 |
Target: 5'- aUCggcCGCGaCCGGGCccGGCGCCGcGUa -3' miRNA: 3'- gAGaauGCGC-GGCCCG--UUGUGGC-CGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 41606 | 0.66 | 0.610174 |
Target: 5'- ---cUugGCGCUcaGGGCAGCGgaaCGGUGa -3' miRNA: 3'- gagaAugCGCGG--CCCGUUGUg--GCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 41424 | 0.7 | 0.350621 |
Target: 5'- cCUCgUAUGCGCCGacUAACACgGGCGg -3' miRNA: 3'- -GAGaAUGCGCGGCccGUUGUGgCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 41283 | 0.66 | 0.578453 |
Target: 5'- uUCggcCGCGCgUGGGCGACAUcaagguauggcgCGGCGc -3' miRNA: 3'- gAGaauGCGCG-GCCCGUUGUG------------GCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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