Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24049 | 5' | -58.5 | NC_005262.1 | + | 41282 | 0.67 | 0.505194 |
Target: 5'- gCUCgaaGCGguCGCCGGGCGcGCACgcgaucgCGGCGg -3' miRNA: 3'- -GAGaa-UGC--GCGGCCCGU-UGUG-------GCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 40553 | 1.09 | 0.000611 |
Target: 5'- gCUCUUACGCGCCGGGCAACACCGGCGg -3' miRNA: 3'- -GAGAAUGCGCGGCCCGUUGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 39860 | 0.67 | 0.5062 |
Target: 5'- ---aUACGCGUCGGGaUggUcgGCUGGCGg -3' miRNA: 3'- gagaAUGCGCGGCCC-GuuG--UGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 37877 | 0.67 | 0.516311 |
Target: 5'- ----gGCGCGCCcGGaGGCACgGGCGg -3' miRNA: 3'- gagaaUGCGCGGcCCgUUGUGgCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 36184 | 0.7 | 0.375522 |
Target: 5'- -aCUgACaUGCCGGGCAAUGCCugGGCGg -3' miRNA: 3'- gaGAaUGcGCGGCCCGUUGUGG--CCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 35827 | 0.66 | 0.567952 |
Target: 5'- ----cAUGgGCCGGaGCGGCGUCGGCGc -3' miRNA: 3'- gagaaUGCgCGGCC-CGUUGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 35644 | 0.72 | 0.276305 |
Target: 5'- gCUCUUuccCGCGCCGGcgaGCGACAUcgCGGCu -3' miRNA: 3'- -GAGAAu--GCGCGGCC---CGUUGUG--GCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 35156 | 0.72 | 0.276305 |
Target: 5'- -----cCGCcgauCCGGGCGACGCUGGCGg -3' miRNA: 3'- gagaauGCGc---GGCCCGUUGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 34577 | 0.71 | 0.334685 |
Target: 5'- gUCgugUGCGCGCCGuGCGGCGCC-GUGa -3' miRNA: 3'- gAGa--AUGCGCGGCcCGUUGUGGcCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 34252 | 0.72 | 0.269608 |
Target: 5'- uCUCgaccuuCGUGCC-GGCGACgGCCGGCGg -3' miRNA: 3'- -GAGaau---GCGCGGcCCGUUG-UGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 34015 | 0.66 | 0.588996 |
Target: 5'- ----gGCGUgacGCCGGGCcGCAUCGuGCGc -3' miRNA: 3'- gagaaUGCG---CGGCCCGuUGUGGC-CGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 33693 | 0.73 | 0.250301 |
Target: 5'- uUCcUGCGaCGUCgGGGCGACugCGGUGg -3' miRNA: 3'- gAGaAUGC-GCGG-CCCGUUGugGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 33478 | 0.67 | 0.515297 |
Target: 5'- ---cUGCGaccuugaGCUGGGCGGCgucgacgaucacgGCCGGCGg -3' miRNA: 3'- gagaAUGCg------CGGCCCGUUG-------------UGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 32883 | 0.68 | 0.496175 |
Target: 5'- gUCgaACGCgaugGCCGGcGCGcCGCCGGUGu -3' miRNA: 3'- gAGaaUGCG----CGGCC-CGUuGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 30241 | 0.67 | 0.526503 |
Target: 5'- -gCUU-CGCGUC-GGCAucCGCCGGCGc -3' miRNA: 3'- gaGAAuGCGCGGcCCGUu-GUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 29863 | 0.67 | 0.536769 |
Target: 5'- -----cCGCGCCGuccGGCAcuACGCCgGGCGg -3' miRNA: 3'- gagaauGCGCGGC---CCGU--UGUGG-CCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 29831 | 0.66 | 0.567952 |
Target: 5'- ----gGCGgguuaGCCGGG-AGCGCCGGCu -3' miRNA: 3'- gagaaUGCg----CGGCCCgUUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 28373 | 0.75 | 0.170351 |
Target: 5'- -gCUUGCGCGCauaGGcGaCAGCGCCGGCc -3' miRNA: 3'- gaGAAUGCGCGg--CC-C-GUUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 28151 | 0.67 | 0.536769 |
Target: 5'- aUCUUccccgaGCGCG-CGGcGCAACugCGcGCGg -3' miRNA: 3'- gAGAA------UGCGCgGCC-CGUUGugGC-CGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 26563 | 0.66 | 0.575298 |
Target: 5'- ----gACGCGCUGcgccaguucgcgcaGGCAuACGCUGGCGg -3' miRNA: 3'- gagaaUGCGCGGC--------------CCGU-UGUGGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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