miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 61141 0.7 0.384083
Target:  5'- ----gACGCGCUGGcGCAGCAgauCgCGGCGg -3'
miRNA:   3'- gagaaUGCGCGGCC-CGUUGU---G-GCCGC- -5'
24049 5' -58.5 NC_005262.1 + 34577 0.71 0.334685
Target:  5'- gUCgugUGCGCGCCGuGCGGCGCC-GUGa -3'
miRNA:   3'- gAGa--AUGCGCGGCcCGUUGUGGcCGC- -5'
24049 5' -58.5 NC_005262.1 + 52603 0.71 0.334685
Target:  5'- ----cGCGUaaaGCCGGGCGagcugaagcGCACCGGCu -3'
miRNA:   3'- gagaaUGCG---CGGCCCGU---------UGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 41424 0.7 0.350621
Target:  5'- cCUCgUAUGCGCCGacUAACACgGGCGg -3'
miRNA:   3'- -GAGaAUGCGCGGCccGUUGUGgCCGC- -5'
24049 5' -58.5 NC_005262.1 + 2660 0.7 0.35879
Target:  5'- ----cGCgGCGCCGGGCGGCGucCUGGCc -3'
miRNA:   3'- gagaaUG-CGCGGCCCGUUGU--GGCCGc -5'
24049 5' -58.5 NC_005262.1 + 4551 0.7 0.35879
Target:  5'- aUCgUGCGCGCgCGGcGCAucucGCGCCaGCGg -3'
miRNA:   3'- gAGaAUGCGCG-GCC-CGU----UGUGGcCGC- -5'
24049 5' -58.5 NC_005262.1 + 61913 0.7 0.36709
Target:  5'- ---aUACGcCGCaGGGCuGCGCCGGCu -3'
miRNA:   3'- gagaAUGC-GCGgCCCGuUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 5156 0.7 0.375522
Target:  5'- gCUCg-GCGCGCUGaucGGUGACGgCCGGCGu -3'
miRNA:   3'- -GAGaaUGCGCGGC---CCGUUGU-GGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 36184 0.7 0.375522
Target:  5'- -aCUgACaUGCCGGGCAAUGCCugGGCGg -3'
miRNA:   3'- gaGAaUGcGCGGCCCGUUGUGG--CCGC- -5'
24049 5' -58.5 NC_005262.1 + 51241 0.71 0.309562
Target:  5'- cCUCaUGCGCGCCGgcuacgguaaggacGGCAAgcugaaccuCACCGGCc -3'
miRNA:   3'- -GAGaAUGCGCGGC--------------CCGUU---------GUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 16884 0.71 0.304422
Target:  5'- ----cGCGCGCCGGGCcGCACCacaccGCa -3'
miRNA:   3'- gagaaUGCGCGGCCCGuUGUGGc----CGc -5'
24049 5' -58.5 NC_005262.1 + 45206 0.72 0.289394
Target:  5'- cCUCgcagGCGgcaugucCGCCGGGCucggccugAACGCCGGCa -3'
miRNA:   3'- -GAGaa--UGC-------GCGGCCCG--------UUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 49714 0.83 0.048225
Target:  5'- ----gGCGUGCCGGGCGGCgaACCGGCGg -3'
miRNA:   3'- gagaaUGCGCGGCCCGUUG--UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 10974 0.77 0.127069
Target:  5'- -gCUgucgGCGCGCCGGG-AACGCCGGUc -3'
miRNA:   3'- gaGAa---UGCGCGGCCCgUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 52941 0.76 0.161604
Target:  5'- ---cUGCGcCGCCuGGGCuuCGCCGGCGg -3'
miRNA:   3'- gagaAUGC-GCGG-CCCGuuGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 61701 0.75 0.184265
Target:  5'- aUCaggGCGCGCCGGGUu-CGCuCGGCGc -3'
miRNA:   3'- gAGaa-UGCGCGGCCCGuuGUG-GCCGC- -5'
24049 5' -58.5 NC_005262.1 + 51361 0.74 0.204371
Target:  5'- gCUCggcacCGCGCCGuccGCGACGCCGGCc -3'
miRNA:   3'- -GAGaau--GCGCGGCc--CGUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 57680 0.73 0.226351
Target:  5'- uUCUcGCGCGCCGGGCGcgGCAa-GGUGc -3'
miRNA:   3'- gAGAaUGCGCGGCCCGU--UGUggCCGC- -5'
24049 5' -58.5 NC_005262.1 + 16729 0.73 0.238074
Target:  5'- ---gUGCGCaCCGGGCAGCACgGGUc -3'
miRNA:   3'- gagaAUGCGcGGCCCGUUGUGgCCGc -5'
24049 5' -58.5 NC_005262.1 + 35156 0.72 0.276305
Target:  5'- -----cCGCcgauCCGGGCGACGCUGGCGg -3'
miRNA:   3'- gagaauGCGc---GGCCCGUUGUGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.