Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24049 | 5' | -58.5 | NC_005262.1 | + | 51361 | 0.74 | 0.204371 |
Target: 5'- gCUCggcacCGCGCCGuccGCGACGCCGGCc -3' miRNA: 3'- -GAGaau--GCGCGGCc--CGUUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 61701 | 0.75 | 0.184265 |
Target: 5'- aUCaggGCGCGCCGGGUu-CGCuCGGCGc -3' miRNA: 3'- gAGaa-UGCGCGGCCCGuuGUG-GCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 52941 | 0.76 | 0.161604 |
Target: 5'- ---cUGCGcCGCCuGGGCuuCGCCGGCGg -3' miRNA: 3'- gagaAUGC-GCGG-CCCGuuGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 10974 | 0.77 | 0.127069 |
Target: 5'- -gCUgucgGCGCGCCGGG-AACGCCGGUc -3' miRNA: 3'- gaGAa---UGCGCGGCCCgUUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 49714 | 0.83 | 0.048225 |
Target: 5'- ----gGCGUGCCGGGCGGCgaACCGGCGg -3' miRNA: 3'- gagaaUGCGCGGCCCGUUG--UGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 41424 | 0.7 | 0.350621 |
Target: 5'- cCUCgUAUGCGCCGacUAACACgGGCGg -3' miRNA: 3'- -GAGaAUGCGCGGCccGUUGUGgCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 2660 | 0.7 | 0.35879 |
Target: 5'- ----cGCgGCGCCGGGCGGCGucCUGGCc -3' miRNA: 3'- gagaaUG-CGCGGCCCGUUGU--GGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 58896 | 0.68 | 0.457026 |
Target: 5'- -gCUgcCGCGCUGcGCGAUcagGCCGGCGg -3' miRNA: 3'- gaGAauGCGCGGCcCGUUG---UGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 56518 | 0.69 | 0.438082 |
Target: 5'- aUCUggACGCGCCGuGGUu-C-CCGGCa -3' miRNA: 3'- gAGAa-UGCGCGGC-CCGuuGuGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 5187 | 0.69 | 0.438082 |
Target: 5'- ----cGCGgGCgCGGGCGcgGCCGGCGc -3' miRNA: 3'- gagaaUGCgCG-GCCCGUugUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 54047 | 0.69 | 0.42878 |
Target: 5'- aUCga--GCGCaCGGGCGACGaCGGCa -3' miRNA: 3'- gAGaaugCGCG-GCCCGUUGUgGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 19441 | 0.69 | 0.423255 |
Target: 5'- aUCUgaaGCGCUGGGCGuuggccucgaugcuCACCGGaCGg -3' miRNA: 3'- gAGAaugCGCGGCCCGUu-------------GUGGCC-GC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 51421 | 0.69 | 0.419596 |
Target: 5'- gCUCggcgGCGCGCgcgaGGGCGAUACCGuCa -3' miRNA: 3'- -GAGaa--UGCGCGg---CCCGUUGUGGCcGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 59119 | 0.69 | 0.410531 |
Target: 5'- -aCUacCGCGCCGaGGCGA-ACCGGCc -3' miRNA: 3'- gaGAauGCGCGGC-CCGUUgUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 47740 | 0.69 | 0.410531 |
Target: 5'- aUCUggUGCGcCGCCGGccGCGGCGaacCCGGCa -3' miRNA: 3'- gAGA--AUGC-GCGGCC--CGUUGU---GGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 61141 | 0.7 | 0.384083 |
Target: 5'- ----gACGCGCUGGcGCAGCAgauCgCGGCGg -3' miRNA: 3'- gagaaUGCGCGGCC-CGUUGU---G-GCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 36184 | 0.7 | 0.375522 |
Target: 5'- -aCUgACaUGCCGGGCAAUGCCugGGCGg -3' miRNA: 3'- gaGAaUGcGCGGCCCGUUGUGG--CCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 5156 | 0.7 | 0.375522 |
Target: 5'- gCUCg-GCGCGCUGaucGGUGACGgCCGGCGu -3' miRNA: 3'- -GAGaaUGCGCGGC---CCGUUGU-GGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 61913 | 0.7 | 0.36709 |
Target: 5'- ---aUACGcCGCaGGGCuGCGCCGGCu -3' miRNA: 3'- gagaAUGC-GCGgCCCGuUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 4551 | 0.7 | 0.35879 |
Target: 5'- aUCgUGCGCGCgCGGcGCAucucGCGCCaGCGg -3' miRNA: 3'- gAGaAUGCGCG-GCC-CGU----UGUGGcCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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