Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24049 | 5' | -58.5 | NC_005262.1 | + | 47740 | 0.69 | 0.410531 |
Target: 5'- aUCUggUGCGcCGCCGGccGCGGCGaacCCGGCa -3' miRNA: 3'- gAGA--AUGC-GCGGCC--CGUUGU---GGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 59119 | 0.69 | 0.410531 |
Target: 5'- -aCUacCGCGCCGaGGCGA-ACCGGCc -3' miRNA: 3'- gaGAauGCGCGGC-CCGUUgUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 29831 | 0.66 | 0.567952 |
Target: 5'- ----gGCGgguuaGCCGGG-AGCGCCGGCu -3' miRNA: 3'- gagaaUGCg----CGGCCCgUUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 47843 | 0.66 | 0.567952 |
Target: 5'- ----cGCGCgauGCCGGGUucgccGCgGCCGGCGg -3' miRNA: 3'- gagaaUGCG---CGGCCCGu----UG-UGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 9242 | 0.67 | 0.5575 |
Target: 5'- ----aAgGCGCCGGGUGAUccgcauuccgACCGGCc -3' miRNA: 3'- gagaaUgCGCGGCCCGUUG----------UGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 17743 | 0.67 | 0.5575 |
Target: 5'- gCUCg-GCGCGCuggCGGGCGAUcucugccugcuGCuCGGCGa -3' miRNA: 3'- -GAGaaUGCGCG---GCCCGUUG-----------UG-GCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 42884 | 0.67 | 0.5575 |
Target: 5'- ------gGCGUCGGGCGacGCGCCGGa- -3' miRNA: 3'- gagaaugCGCGGCCCGU--UGUGGCCgc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 6318 | 0.67 | 0.547103 |
Target: 5'- ----cGCGCGgCGGGCuucAGCAucUCGGCGg -3' miRNA: 3'- gagaaUGCGCgGCCCG---UUGU--GGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 29863 | 0.67 | 0.536769 |
Target: 5'- -----cCGCGCCGuccGGCAcuACGCCgGGCGg -3' miRNA: 3'- gagaauGCGCGGC---CCGU--UGUGG-CCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 30241 | 0.67 | 0.526503 |
Target: 5'- -gCUU-CGCGUC-GGCAucCGCCGGCGc -3' miRNA: 3'- gaGAAuGCGCGGcCCGUu-GUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 14245 | 0.66 | 0.567952 |
Target: 5'- aCUCcucgGCGCGgCGGaCAAUcCCGGCGc -3' miRNA: 3'- -GAGaa--UGCGCgGCCcGUUGuGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 12896 | 0.66 | 0.575298 |
Target: 5'- uUCUUcACGCGCCGGcuGCG-CGCCgcccaaugcucacgGGCGu -3' miRNA: 3'- gAGAA-UGCGCGGCC--CGUuGUGG--------------CCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 5281 | 0.77 | 0.119407 |
Target: 5'- cCUCgguCGCGCCGGccgcgcccgcgcccGCGACGCCGGCc -3' miRNA: 3'- -GAGaauGCGCGGCC--------------CGUUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 18012 | 0.66 | 0.610174 |
Target: 5'- gCUCgccgUugGCGUCGGcGCcg-AUCGGCGg -3' miRNA: 3'- -GAGa---AugCGCGGCC-CGuugUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 50961 | 0.66 | 0.610174 |
Target: 5'- ----aGCGCGCCGugcgauugcgucGGCAcCugCGGCa -3' miRNA: 3'- gagaaUGCGCGGC------------CCGUuGugGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 7753 | 0.66 | 0.609113 |
Target: 5'- aUCUUugGCGUGCCGcucGCGGagauagccgucgcCGCCGGCGu -3' miRNA: 3'- gAGAA--UGCGCGGCc--CGUU-------------GUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 13551 | 0.66 | 0.599572 |
Target: 5'- ----gACGCGCgCGGGCuucGCGCCcuuGCGa -3' miRNA: 3'- gagaaUGCGCG-GCCCGu--UGUGGc--CGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 42239 | 0.66 | 0.588996 |
Target: 5'- aUCggcCGCGaCCGGGCccGGCGCCGcGUa -3' miRNA: 3'- gAGaauGCGC-GGCCCG--UUGUGGC-CGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 20015 | 0.66 | 0.588996 |
Target: 5'- -aCUacUGCGUggcaaagaGCCGcGGCGACAUUGGCa -3' miRNA: 3'- gaGA--AUGCG--------CGGC-CCGUUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 5525 | 0.66 | 0.578453 |
Target: 5'- gUCaUGcCGCGCCGGGacaucgaaaaGAC-CCGGCu -3' miRNA: 3'- gAGaAU-GCGCGGCCCg---------UUGuGGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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