miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 46812 0.66 0.610174
Target:  5'- aUCcgguCGUGCCGGauuGCGCCGGCu -3'
miRNA:   3'- gAGaau-GCGCGGCCcguUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 30241 0.67 0.526503
Target:  5'- -gCUU-CGCGUC-GGCAucCGCCGGCGc -3'
miRNA:   3'- gaGAAuGCGCGGcCCGUu-GUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 33478 0.67 0.515297
Target:  5'- ---cUGCGaccuugaGCUGGGCGGCgucgacgaucacgGCCGGCGg -3'
miRNA:   3'- gagaAUGCg------CGGCCCGUUG-------------UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 5281 0.77 0.119407
Target:  5'- cCUCgguCGCGCCGGccgcgcccgcgcccGCGACGCCGGCc -3'
miRNA:   3'- -GAGaauGCGCGGCC--------------CGUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 13551 0.66 0.599572
Target:  5'- ----gACGCGCgCGGGCuucGCGCCcuuGCGa -3'
miRNA:   3'- gagaaUGCGCG-GCCCGu--UGUGGc--CGC- -5'
24049 5' -58.5 NC_005262.1 + 42239 0.66 0.588996
Target:  5'- aUCggcCGCGaCCGGGCccGGCGCCGcGUa -3'
miRNA:   3'- gAGaauGCGC-GGCCCG--UUGUGGC-CGc -5'
24049 5' -58.5 NC_005262.1 + 5525 0.66 0.578453
Target:  5'- gUCaUGcCGCGCCGGGacaucgaaaaGAC-CCGGCu -3'
miRNA:   3'- gAGaAU-GCGCGGCCCg---------UUGuGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 12896 0.66 0.575298
Target:  5'- uUCUUcACGCGCCGGcuGCG-CGCCgcccaaugcucacgGGCGu -3'
miRNA:   3'- gAGAA-UGCGCGGCC--CGUuGUGG--------------CCGC- -5'
24049 5' -58.5 NC_005262.1 + 47843 0.66 0.567952
Target:  5'- ----cGCGCgauGCCGGGUucgccGCgGCCGGCGg -3'
miRNA:   3'- gagaaUGCG---CGGCCCGu----UG-UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 29863 0.67 0.536769
Target:  5'- -----cCGCGCCGuccGGCAcuACGCCgGGCGg -3'
miRNA:   3'- gagaauGCGCGGC---CCGU--UGUGG-CCGC- -5'
24049 5' -58.5 NC_005262.1 + 17743 0.67 0.5575
Target:  5'- gCUCg-GCGCGCuggCGGGCGAUcucugccugcuGCuCGGCGa -3'
miRNA:   3'- -GAGaaUGCGCG---GCCCGUUG-----------UG-GCCGC- -5'
24049 5' -58.5 NC_005262.1 + 29831 0.66 0.567952
Target:  5'- ----gGCGgguuaGCCGGG-AGCGCCGGCu -3'
miRNA:   3'- gagaaUGCg----CGGCCCgUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 18012 0.66 0.610174
Target:  5'- gCUCgccgUugGCGUCGGcGCcg-AUCGGCGg -3'
miRNA:   3'- -GAGa---AugCGCGGCC-CGuugUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 42884 0.67 0.5575
Target:  5'- ------gGCGUCGGGCGacGCGCCGGa- -3'
miRNA:   3'- gagaaugCGCGGCCCGU--UGUGGCCgc -5'
24049 5' -58.5 NC_005262.1 + 50961 0.66 0.610174
Target:  5'- ----aGCGCGCCGugcgauugcgucGGCAcCugCGGCa -3'
miRNA:   3'- gagaaUGCGCGGC------------CCGUuGugGCCGc -5'
24049 5' -58.5 NC_005262.1 + 14245 0.66 0.567952
Target:  5'- aCUCcucgGCGCGgCGGaCAAUcCCGGCGc -3'
miRNA:   3'- -GAGaa--UGCGCgGCCcGUUGuGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 6318 0.67 0.547103
Target:  5'- ----cGCGCGgCGGGCuucAGCAucUCGGCGg -3'
miRNA:   3'- gagaaUGCGCgGCCCG---UUGU--GGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 49061 0.67 0.516311
Target:  5'- uUCUUGaGCGCCGccuGCAuCugCGGCGu -3'
miRNA:   3'- gAGAAUgCGCGGCc--CGUuGugGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 7753 0.66 0.609113
Target:  5'- aUCUUugGCGUGCCGcucGCGGagauagccgucgcCGCCGGCGu -3'
miRNA:   3'- gAGAA--UGCGCGGCc--CGUU-------------GUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 20015 0.66 0.588996
Target:  5'- -aCUacUGCGUggcaaagaGCCGcGGCGACAUUGGCa -3'
miRNA:   3'- gaGA--AUGCG--------CGGC-CCGUUGUGGCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.