miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 32883 0.68 0.496175
Target:  5'- gUCgaACGCgaugGCCGGcGCGcCGCCGGUGu -3'
miRNA:   3'- gAGaaUGCG----CGGCC-CGUuGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 33478 0.67 0.515297
Target:  5'- ---cUGCGaccuugaGCUGGGCGGCgucgacgaucacgGCCGGCGg -3'
miRNA:   3'- gagaAUGCg------CGGCCCGUUG-------------UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 29831 0.66 0.567952
Target:  5'- ----gGCGgguuaGCCGGG-AGCGCCGGCu -3'
miRNA:   3'- gagaaUGCg----CGGCCCgUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 7753 0.66 0.609113
Target:  5'- aUCUUugGCGUGCCGcucGCGGagauagccgucgcCGCCGGCGu -3'
miRNA:   3'- gAGAA--UGCGCGGCc--CGUU-------------GUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 58954 0.68 0.447498
Target:  5'- ----aACGCG-CGGaGCuGCGCCGGCGu -3'
miRNA:   3'- gagaaUGCGCgGCC-CGuUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 23950 0.68 0.476401
Target:  5'- ----aACGaccggaCGGGCGGCACCGGCa -3'
miRNA:   3'- gagaaUGCgcg---GCCCGUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 30241 0.67 0.526503
Target:  5'- -gCUU-CGCGUC-GGCAucCGCCGGCGc -3'
miRNA:   3'- gaGAAuGCGCGGcCCGUu-GUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 50961 0.66 0.610174
Target:  5'- ----aGCGCGCCGugcgauugcgucGGCAcCugCGGCa -3'
miRNA:   3'- gagaaUGCGCGGC------------CCGUuGugGCCGc -5'
24049 5' -58.5 NC_005262.1 + 48129 0.68 0.48624
Target:  5'- ----gACGCGCuugCGGGCGcgGCCGGCu -3'
miRNA:   3'- gagaaUGCGCG---GCCCGUugUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 18012 0.66 0.610174
Target:  5'- gCUCgccgUugGCGUCGGcGCcg-AUCGGCGg -3'
miRNA:   3'- -GAGa---AugCGCGGCC-CGuugUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 49061 0.67 0.516311
Target:  5'- uUCUUGaGCGCCGccuGCAuCugCGGCGu -3'
miRNA:   3'- gAGAAUgCGCGGCc--CGUuGugGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 44703 0.68 0.496175
Target:  5'- -cCUUGCGCG-CGGGCuucucGCGCuCGaGCGg -3'
miRNA:   3'- gaGAAUGCGCgGCCCGu----UGUG-GC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 42884 0.67 0.5575
Target:  5'- ------gGCGUCGGGCGacGCGCCGGa- -3'
miRNA:   3'- gagaaugCGCGGCCCGU--UGUGGCCgc -5'
24049 5' -58.5 NC_005262.1 + 47843 0.66 0.567952
Target:  5'- ----cGCGCgauGCCGGGUucgccGCgGCCGGCGg -3'
miRNA:   3'- gagaaUGCG---CGGCCCGu----UG-UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 5525 0.66 0.578453
Target:  5'- gUCaUGcCGCGCCGGGacaucgaaaaGAC-CCGGCu -3'
miRNA:   3'- gAGaAU-GCGCGGCCCg---------UUGuGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 13551 0.66 0.599572
Target:  5'- ----gACGCGCgCGGGCuucGCGCCcuuGCGa -3'
miRNA:   3'- gagaaUGCGCG-GCCCGu--UGUGGc--CGC- -5'
24049 5' -58.5 NC_005262.1 + 22961 0.69 0.42878
Target:  5'- gCUCUgccgGCuCGaaguCCGaGGCAACGCUGGCGa -3'
miRNA:   3'- -GAGAa---UGcGC----GGC-CCGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 48165 0.69 0.438082
Target:  5'- gUCg---GCGCCGGGCGGCucguCgCGGCa -3'
miRNA:   3'- gAGaaugCGCGGCCCGUUGu---G-GCCGc -5'
24049 5' -58.5 NC_005262.1 + 17076 0.68 0.460867
Target:  5'- ----cGCGCGCUcggccggcggcagcaGGGCAAUAUCGGUGc -3'
miRNA:   3'- gagaaUGCGCGG---------------CCCGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 53790 0.68 0.476401
Target:  5'- cCUUcgACGCgGCCGGGUucugcGCGCCcGGCu -3'
miRNA:   3'- -GAGaaUGCG-CGGCCCGu----UGUGG-CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.