Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24049 | 5' | -58.5 | NC_005262.1 | + | 50961 | 0.66 | 0.610174 |
Target: 5'- ----aGCGCGCCGugcgauugcgucGGCAcCugCGGCa -3' miRNA: 3'- gagaaUGCGCGGC------------CCGUuGugGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 54268 | 0.68 | 0.457026 |
Target: 5'- ----cACGCGCuCGGaCAGgACCGGCGc -3' miRNA: 3'- gagaaUGCGCG-GCCcGUUgUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 5281 | 0.77 | 0.119407 |
Target: 5'- cCUCgguCGCGCCGGccgcgcccgcgcccGCGACGCCGGCc -3' miRNA: 3'- -GAGaauGCGCGGCC--------------CGUUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 13551 | 0.66 | 0.599572 |
Target: 5'- ----gACGCGCgCGGGCuucGCGCCcuuGCGa -3' miRNA: 3'- gagaaUGCGCG-GCCCGu--UGUGGc--CGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 5525 | 0.66 | 0.578453 |
Target: 5'- gUCaUGcCGCGCCGGGacaucgaaaaGAC-CCGGCu -3' miRNA: 3'- gAGaAU-GCGCGGCCCg---------UUGuGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 33693 | 0.73 | 0.250301 |
Target: 5'- uUCcUGCGaCGUCgGGGCGACugCGGUGg -3' miRNA: 3'- gAGaAUGC-GCGG-CCCGUUGugGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 24963 | 0.7 | 0.36709 |
Target: 5'- -cCUUcACGCGCCGGcggauGCAcaucgccgaGCACUGGCGc -3' miRNA: 3'- gaGAA-UGCGCGGCC-----CGU---------UGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 24316 | 0.69 | 0.400702 |
Target: 5'- aUCUUacucaaccaaucgGCGUGCCGGcGCAGCGuCgCGGCu -3' miRNA: 3'- gAGAA-------------UGCGCGGCC-CGUUGU-G-GCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 22961 | 0.69 | 0.42878 |
Target: 5'- gCUCUgccgGCuCGaaguCCGaGGCAACGCUGGCGa -3' miRNA: 3'- -GAGAa---UGcGC----GGC-CCGUUGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 48165 | 0.69 | 0.438082 |
Target: 5'- gUCg---GCGCCGGGCGGCucguCgCGGCa -3' miRNA: 3'- gAGaaugCGCGGCCCGUUGu---G-GCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 5156 | 0.68 | 0.473469 |
Target: 5'- gUCgcACGCGCCgccgccgcGGGCcugcccgccgaucaGGCGCCGGCc -3' miRNA: 3'- gAGaaUGCGCGG--------CCCG--------------UUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 48129 | 0.68 | 0.48624 |
Target: 5'- ----gACGCGCuugCGGGCGcgGCCGGCu -3' miRNA: 3'- gagaaUGCGCG---GCCCGUugUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 32883 | 0.68 | 0.496175 |
Target: 5'- gUCgaACGCgaugGCCGGcGCGcCGCCGGUGu -3' miRNA: 3'- gAGaaUGCG----CGGCC-CGUuGUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 33478 | 0.67 | 0.515297 |
Target: 5'- ---cUGCGaccuugaGCUGGGCGGCgucgacgaucacgGCCGGCGg -3' miRNA: 3'- gagaAUGCg------CGGCCCGUUG-------------UGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 42884 | 0.67 | 0.5575 |
Target: 5'- ------gGCGUCGGGCGacGCGCCGGa- -3' miRNA: 3'- gagaaugCGCGGCCCGU--UGUGGCCgc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 47843 | 0.66 | 0.567952 |
Target: 5'- ----cGCGCgauGCCGGGUucgccGCgGCCGGCGg -3' miRNA: 3'- gagaaUGCG---CGGCCCGu----UG-UGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 18012 | 0.66 | 0.610174 |
Target: 5'- gCUCgccgUugGCGUCGGcGCcg-AUCGGCGg -3' miRNA: 3'- -GAGa---AugCGCGGCC-CGuugUGGCCGC- -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 17492 | 0.66 | 0.610174 |
Target: 5'- ----cGCGCGCCGcGcGCGACGCgucgauCGGCa -3' miRNA: 3'- gagaaUGCGCGGC-C-CGUUGUG------GCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 43845 | 0.68 | 0.466662 |
Target: 5'- -----cCGCGCgCGGcGguGCGCCGGCa -3' miRNA: 3'- gagaauGCGCG-GCC-CguUGUGGCCGc -5' |
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24049 | 5' | -58.5 | NC_005262.1 | + | 53811 | 0.68 | 0.466662 |
Target: 5'- gUCgacaGCG-GCaCGGGCAucgagcugacGCACCGGCGc -3' miRNA: 3'- gAGaa--UGCgCG-GCCCGU----------UGUGGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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