miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24049 5' -58.5 NC_005262.1 + 53811 0.68 0.466662
Target:  5'- gUCgacaGCG-GCaCGGGCAucgagcugacGCACCGGCGc -3'
miRNA:   3'- gAGaa--UGCgCG-GCCCGU----------UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 41424 0.7 0.350621
Target:  5'- cCUCgUAUGCGCCGacUAACACgGGCGg -3'
miRNA:   3'- -GAGaAUGCGCGGCccGUUGUGgCCGC- -5'
24049 5' -58.5 NC_005262.1 + 34577 0.71 0.334685
Target:  5'- gUCgugUGCGCGCCGuGCGGCGCC-GUGa -3'
miRNA:   3'- gAGa--AUGCGCGGCcCGUUGUGGcCGC- -5'
24049 5' -58.5 NC_005262.1 + 61236 0.66 0.588996
Target:  5'- ---aUACGUGUgGcGCAccuACACCGGCGg -3'
miRNA:   3'- gagaAUGCGCGgCcCGU---UGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 58896 0.68 0.457026
Target:  5'- -gCUgcCGCGCUGcGCGAUcagGCCGGCGg -3'
miRNA:   3'- gaGAauGCGCGGCcCGUUG---UGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 5187 0.69 0.438082
Target:  5'- ----cGCGgGCgCGGGCGcgGCCGGCGc -3'
miRNA:   3'- gagaaUGCgCG-GCCCGUugUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 54047 0.69 0.42878
Target:  5'- aUCga--GCGCaCGGGCGACGaCGGCa -3'
miRNA:   3'- gAGaaugCGCG-GCCCGUUGUgGCCGc -5'
24049 5' -58.5 NC_005262.1 + 19441 0.69 0.423255
Target:  5'- aUCUgaaGCGCUGGGCGuuggccucgaugcuCACCGGaCGg -3'
miRNA:   3'- gAGAaugCGCGGCCCGUu-------------GUGGCC-GC- -5'
24049 5' -58.5 NC_005262.1 + 56518 0.69 0.438082
Target:  5'- aUCUggACGCGCCGuGGUu-C-CCGGCa -3'
miRNA:   3'- gAGAa-UGCGCGGC-CCGuuGuGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 53772 0.66 0.578453
Target:  5'- ----gGCGgGCUGuacgucGGCGAUACCGGCa -3'
miRNA:   3'- gagaaUGCgCGGC------CCGUUGUGGCCGc -5'
24049 5' -58.5 NC_005262.1 + 34015 0.66 0.588996
Target:  5'- ----gGCGUgacGCCGGGCcGCAUCGuGCGc -3'
miRNA:   3'- gagaaUGCG---CGGCCCGuUGUGGC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 60685 0.66 0.588996
Target:  5'- -gCUgGCGaCGCUGGGCuucuuCGCgGGCGc -3'
miRNA:   3'- gaGAaUGC-GCGGCCCGuu---GUGgCCGC- -5'
24049 5' -58.5 NC_005262.1 + 19120 0.66 0.598513
Target:  5'- -gCUUGuCGCgGUCGGGCAGCAugucgauaggaacCCGGUu -3'
miRNA:   3'- gaGAAU-GCG-CGGCCCGUUGU-------------GGCCGc -5'
24049 5' -58.5 NC_005262.1 + 5857 0.66 0.599572
Target:  5'- aUC-UGCaCGCUGGuCAGCACCGuGCGg -3'
miRNA:   3'- gAGaAUGcGCGGCCcGUUGUGGC-CGC- -5'
24049 5' -58.5 NC_005262.1 + 53430 0.66 0.599572
Target:  5'- -aCggACGUGCUGuuccuccagaaGcGCGGCGCCGGCGu -3'
miRNA:   3'- gaGaaUGCGCGGC-----------C-CGUUGUGGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 57515 0.66 0.599572
Target:  5'- uUCagcguCGCGCCGGGCAuCgACC-GCGa -3'
miRNA:   3'- gAGaau--GCGCGGCCCGUuG-UGGcCGC- -5'
24049 5' -58.5 NC_005262.1 + 10452 0.66 0.610174
Target:  5'- gCUCg-GCaaGCCGGGCGgaagccgcgacgACAgCGGCGa -3'
miRNA:   3'- -GAGaaUGcgCGGCCCGU------------UGUgGCCGC- -5'
24049 5' -58.5 NC_005262.1 + 299 0.66 0.610174
Target:  5'- -cCUUGCgacagGCGUCGGGC-ACGCCaGCc -3'
miRNA:   3'- gaGAAUG-----CGCGGCCCGuUGUGGcCGc -5'
24049 5' -58.5 NC_005262.1 + 17492 0.66 0.610174
Target:  5'- ----cGCGCGCCGcGcGCGACGCgucgauCGGCa -3'
miRNA:   3'- gagaaUGCGCGGC-C-CGUUGUG------GCCGc -5'
24049 5' -58.5 NC_005262.1 + 24349 0.65 0.617606
Target:  5'- gCUCUgcgucgGCGCGCCugauaccuGCAACccugucgacgccaaACCGGCGg -3'
miRNA:   3'- -GAGAa-----UGCGCGGcc------CGUUG--------------UGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.