miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24050 3' -51.9 NC_005262.1 + 11111 0.66 0.930552
Target:  5'- gGCGgggcaAUGGUG-CAACGACCCgGa -3'
miRNA:   3'- -CGUauuagUGCCGCaGUUGCUGGGgC- -5'
24050 3' -51.9 NC_005262.1 + 40535 0.66 0.930552
Target:  5'- uCAUcGUCGCGGCGg--GCGGCUCUu -3'
miRNA:   3'- cGUAuUAGUGCCGCaguUGCUGGGGc -5'
24050 3' -51.9 NC_005262.1 + 30354 0.66 0.930552
Target:  5'- uGCGUGG-CugGGgcagGUCAACGACUUCa -3'
miRNA:   3'- -CGUAUUaGugCCg---CAGUUGCUGGGGc -5'
24050 3' -51.9 NC_005262.1 + 43887 0.66 0.930552
Target:  5'- cGCAUGgccgacaugaaGUCgaaGGCGUCAgcGCGGCgCCa -3'
miRNA:   3'- -CGUAU-----------UAGug-CCGCAGU--UGCUGgGGc -5'
24050 3' -51.9 NC_005262.1 + 49833 0.66 0.930552
Target:  5'- cGCGggcgcCGcCGGCGUCGguGCGGCUUCGg -3'
miRNA:   3'- -CGUauua-GU-GCCGCAGU--UGCUGGGGC- -5'
24050 3' -51.9 NC_005262.1 + 40674 0.66 0.930552
Target:  5'- cCAcGcgCAUaGCGUCuACGACCCUGg -3'
miRNA:   3'- cGUaUuaGUGcCGCAGuUGCUGGGGC- -5'
24050 3' -51.9 NC_005262.1 + 17702 0.66 0.930552
Target:  5'- cCGUGGUCGCuGGCccgAACGAgCCCGa -3'
miRNA:   3'- cGUAUUAGUG-CCGcagUUGCUgGGGC- -5'
24050 3' -51.9 NC_005262.1 + 33689 0.66 0.930552
Target:  5'- uGCGacGUCGgGGCGacugCggUGGCCUCGa -3'
miRNA:   3'- -CGUauUAGUgCCGCa---GuuGCUGGGGC- -5'
24050 3' -51.9 NC_005262.1 + 40396 0.66 0.929995
Target:  5'- aGCG--GUCGcCGGgGUUGaacugcuGCGGCCCCGu -3'
miRNA:   3'- -CGUauUAGU-GCCgCAGU-------UGCUGGGGC- -5'
24050 3' -51.9 NC_005262.1 + 48102 0.66 0.929995
Target:  5'- uGCGUGGUCugGGUGUUggUcgcggggGugCCgGg -3'
miRNA:   3'- -CGUAUUAGugCCGCAGuuG-------CugGGgC- -5'
24050 3' -51.9 NC_005262.1 + 41308 0.66 0.92717
Target:  5'- gGUAUGG-CGCGGCGcgauugcCGacaucccaacuguucACGGCCCCGg -3'
miRNA:   3'- -CGUAUUaGUGCCGCa------GU---------------UGCUGGGGC- -5'
24050 3' -51.9 NC_005262.1 + 40367 0.66 0.92486
Target:  5'- ---cGAUCGuCGGCGacgUCGACGGCCUg- -3'
miRNA:   3'- cguaUUAGU-GCCGC---AGUUGCUGGGgc -5'
24050 3' -51.9 NC_005262.1 + 12024 0.66 0.91889
Target:  5'- cGCAaucUGGUCGCGcGCGUCcccggcauGGCaGACCUCa -3'
miRNA:   3'- -CGU---AUUAGUGC-CGCAG--------UUG-CUGGGGc -5'
24050 3' -51.9 NC_005262.1 + 16134 0.66 0.918278
Target:  5'- cGCA-AGUCGCGGUagcggcgGUUGAUGAUCUCGa -3'
miRNA:   3'- -CGUaUUAGUGCCG-------CAGUUGCUGGGGC- -5'
24050 3' -51.9 NC_005262.1 + 41812 0.66 0.918278
Target:  5'- gGCAUucAUCGaauacaccggaauCGGCGUUAcCGACCCUc -3'
miRNA:   3'- -CGUAu-UAGU-------------GCCGCAGUuGCUGGGGc -5'
24050 3' -51.9 NC_005262.1 + 50396 0.66 0.912643
Target:  5'- cGCGaaccgCGCGGCGaUCAGCG-CCgCGg -3'
miRNA:   3'- -CGUauua-GUGCCGC-AGUUGCuGGgGC- -5'
24050 3' -51.9 NC_005262.1 + 52151 0.66 0.912643
Target:  5'- ---gGGagGCGGCGcgCAACuACCCCGg -3'
miRNA:   3'- cguaUUagUGCCGCa-GUUGcUGGGGC- -5'
24050 3' -51.9 NC_005262.1 + 60132 0.66 0.906122
Target:  5'- cCAgcGUCGCGGCGaaggCAugGGCgaaguaCCCGg -3'
miRNA:   3'- cGUauUAGUGCCGCa---GUugCUG------GGGC- -5'
24050 3' -51.9 NC_005262.1 + 35908 0.66 0.906122
Target:  5'- gGCcgg--CACaGUGUCGAUGGCCUCGa -3'
miRNA:   3'- -CGuauuaGUGcCGCAGUUGCUGGGGC- -5'
24050 3' -51.9 NC_005262.1 + 19438 0.66 0.905455
Target:  5'- gGCAUcugAAgcgCugGGCGuuggccucgaugcUCAccggACGGCCCCGa -3'
miRNA:   3'- -CGUA---UUa--GugCCGC-------------AGU----UGCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.