miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24050 5' -60.3 NC_005262.1 + 42238 0.66 0.550156
Target:  5'- -uCGGCc---GCGACCgGGCCCgGCGCc -3'
miRNA:   3'- guGCCGcaguCGCUGGgCUGGG-UGCG- -5'
24050 5' -60.3 NC_005262.1 + 41935 0.66 0.550156
Target:  5'- uCACGGgGUUcucgGGCGAaaucccgcgcCuuGugCCGCGCc -3'
miRNA:   3'- -GUGCCgCAG----UCGCU----------GggCugGGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 56709 0.66 0.550156
Target:  5'- aCAUGGUcgaGUCguAGCuGCCCuucgucGCCCACGCg -3'
miRNA:   3'- -GUGCCG---CAG--UCGcUGGGc-----UGGGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 11860 0.66 0.550156
Target:  5'- gACGGCcccgcuGUCGGCGACgUGuaUCGCGCg -3'
miRNA:   3'- gUGCCG------CAGUCGCUGgGCugGGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 15187 0.66 0.540006
Target:  5'- uCAgGGCGUCGGguuuCGAguugccUCCGGCCCGagGCg -3'
miRNA:   3'- -GUgCCGCAGUC----GCU------GGGCUGGGUg-CG- -5'
24050 5' -60.3 NC_005262.1 + 23662 0.66 0.540006
Target:  5'- uCACGGCGaUCu----CCUGcGCCCGCGCg -3'
miRNA:   3'- -GUGCCGC-AGucgcuGGGC-UGGGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 51816 0.66 0.540006
Target:  5'- -uCGGCGacgacuUCAGCGcGgCCGACgUGCGCg -3'
miRNA:   3'- guGCCGC------AGUCGC-UgGGCUGgGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 5319 0.66 0.530926
Target:  5'- gCGCGGCGUCgacgccacGGCGAucgugcaggauacgcCCuCGgucgcgccggccgcGCCCGCGCc -3'
miRNA:   3'- -GUGCCGCAG--------UCGCU---------------GG-GC--------------UGGGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 56929 0.66 0.52992
Target:  5'- gGCcGCGcUCgagaAGCGcACgCCGAUCCGCGCg -3'
miRNA:   3'- gUGcCGC-AG----UCGC-UG-GGCUGGGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 14220 0.66 0.52992
Target:  5'- gACGGCGggcGCGAUgUCGACC-ACGCa -3'
miRNA:   3'- gUGCCGCaguCGCUG-GGCUGGgUGCG- -5'
24050 5' -60.3 NC_005262.1 + 35752 0.66 0.52992
Target:  5'- cUACGGCcaaGGCGGCauuuuCGuucACCCGCGCg -3'
miRNA:   3'- -GUGCCGcagUCGCUGg----GC---UGGGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 59687 0.66 0.52992
Target:  5'- -gUGGaCGaUCGGCGugCCG--CCACGCg -3'
miRNA:   3'- guGCC-GC-AGUCGCugGGCugGGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 45213 0.66 0.52992
Target:  5'- gGCGGCauGUCcGCcgGGCUCGGCCUgaACGCc -3'
miRNA:   3'- gUGCCG--CAGuCG--CUGGGCUGGG--UGCG- -5'
24050 5' -60.3 NC_005262.1 + 29258 0.66 0.52992
Target:  5'- -uCGGCGaCGGCcGCCUGACgcauggUCGCGCg -3'
miRNA:   3'- guGCCGCaGUCGcUGGGCUG------GGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 33748 0.66 0.523902
Target:  5'- aCGCGGCGacCAGCGAggcgcgcucgucagcCUCGgacACCUGCGCc -3'
miRNA:   3'- -GUGCCGCa-GUCGCU---------------GGGC---UGGGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 57081 0.66 0.519905
Target:  5'- -uCGGCGagaUCGGCGGcuuCCCGAUCauguuccacggCACGCa -3'
miRNA:   3'- guGCCGC---AGUCGCU---GGGCUGG-----------GUGCG- -5'
24050 5' -60.3 NC_005262.1 + 20724 0.66 0.519905
Target:  5'- uCACGGuCGcgucgcUCGGCaGCUCGACCCcUGCc -3'
miRNA:   3'- -GUGCC-GC------AGUCGcUGGGCUGGGuGCG- -5'
24050 5' -60.3 NC_005262.1 + 12659 0.66 0.519905
Target:  5'- -cCGGCGgcagCAGCaGCUCGACgaGCGCc -3'
miRNA:   3'- guGCCGCa---GUCGcUGGGCUGggUGCG- -5'
24050 5' -60.3 NC_005262.1 + 6119 0.66 0.519905
Target:  5'- aACGGCGgcaCAGUcGCCuCGAUgUGCGCg -3'
miRNA:   3'- gUGCCGCa--GUCGcUGG-GCUGgGUGCG- -5'
24050 5' -60.3 NC_005262.1 + 11080 0.66 0.519905
Target:  5'- aGCGGCcaaagGGCGGCCCG-CUggCACGCu -3'
miRNA:   3'- gUGCCGcag--UCGCUGGGCuGG--GUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.