miRNA display CGI


Results 1 - 20 of 158 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24051 3' -56.4 NC_005262.1 + 16593 0.66 0.677393
Target:  5'- ---uGUGCUGGUcgaGGCGGCgaagcaGCCGCGu- -3'
miRNA:   3'- guuuUACGGCCG---UCGCCG------UGGCGUgu -5'
24051 3' -56.4 NC_005262.1 + 39101 0.66 0.677393
Target:  5'- gAAGAUGCCGGCAccauucGUGuuGCuCGCGCc -3'
miRNA:   3'- gUUUUACGGCCGU------CGCcgUG-GCGUGu -5'
24051 3' -56.4 NC_005262.1 + 36094 0.66 0.677393
Target:  5'- --uGAUGCgaCGGCAcucgcGCGGCACguggaaCGCACGa -3'
miRNA:   3'- guuUUACG--GCCGU-----CGCCGUG------GCGUGU- -5'
24051 3' -56.4 NC_005262.1 + 40659 0.66 0.677393
Target:  5'- -----cGCgaCGGUcGCGGCACCGC-CGg -3'
miRNA:   3'- guuuuaCG--GCCGuCGCCGUGGCGuGU- -5'
24051 3' -56.4 NC_005262.1 + 11523 0.66 0.677393
Target:  5'- -----cGCgGGC-GCGGCGugUCGCGCAc -3'
miRNA:   3'- guuuuaCGgCCGuCGCCGU--GGCGUGU- -5'
24051 3' -56.4 NC_005262.1 + 14573 0.66 0.676305
Target:  5'- -----cGCC-GCGGCGcucacgcGCACCGCACc -3'
miRNA:   3'- guuuuaCGGcCGUCGC-------CGUGGCGUGu -5'
24051 3' -56.4 NC_005262.1 + 10070 0.66 0.676305
Target:  5'- ----uUGCCaGCAGgcucgauCGGCuCCGCGCAc -3'
miRNA:   3'- guuuuACGGcCGUC-------GCCGuGGCGUGU- -5'
24051 3' -56.4 NC_005262.1 + 58979 0.66 0.675216
Target:  5'- -----cGCCGGCGGCcucacgccucccGCGCCGuCGCGc -3'
miRNA:   3'- guuuuaCGGCCGUCGc-----------CGUGGC-GUGU- -5'
24051 3' -56.4 NC_005262.1 + 49653 0.66 0.670858
Target:  5'- -cGGcgGCCugcaaGGCGGCGGCAUggggauggucggcggCGCGCGc -3'
miRNA:   3'- guUUuaCGG-----CCGUCGCCGUG---------------GCGUGU- -5'
24051 3' -56.4 NC_005262.1 + 44667 0.66 0.666494
Target:  5'- aAAGAcGCCGGCGaCGcGC-CCGCGCc -3'
miRNA:   3'- gUUUUaCGGCCGUcGC-CGuGGCGUGu -5'
24051 3' -56.4 NC_005262.1 + 52826 0.66 0.666494
Target:  5'- -----cGCuCGGCgAGCGGCugaagGCUGCGCu -3'
miRNA:   3'- guuuuaCG-GCCG-UCGCCG-----UGGCGUGu -5'
24051 3' -56.4 NC_005262.1 + 49824 0.66 0.666494
Target:  5'- -----cGCCGGCGucgguGCGGCuucgGCCGC-CGg -3'
miRNA:   3'- guuuuaCGGCCGU-----CGCCG----UGGCGuGU- -5'
24051 3' -56.4 NC_005262.1 + 43909 0.66 0.666494
Target:  5'- -----gGCCGGCccGCGGCcgugucGCCGCGa- -3'
miRNA:   3'- guuuuaCGGCCGu-CGCCG------UGGCGUgu -5'
24051 3' -56.4 NC_005262.1 + 58916 0.66 0.659939
Target:  5'- -----gGCCGGCGGCccgaccgauGGCGCgcgcuucucggucggCGCGCAg -3'
miRNA:   3'- guuuuaCGGCCGUCG---------CCGUG---------------GCGUGU- -5'
24051 3' -56.4 NC_005262.1 + 13029 0.66 0.659939
Target:  5'- --cGAUGCCGucgcgcacgcccuuCAGC-GCGCCGCGCAg -3'
miRNA:   3'- guuUUACGGCc-------------GUCGcCGUGGCGUGU- -5'
24051 3' -56.4 NC_005262.1 + 12412 0.66 0.655563
Target:  5'- -----cGCCGcGCGcuGCGGCacgaGCCGCAUg -3'
miRNA:   3'- guuuuaCGGC-CGU--CGCCG----UGGCGUGu -5'
24051 3' -56.4 NC_005262.1 + 4233 0.66 0.655563
Target:  5'- ----cUGCaCGGCGccacGCGGCGCCGUu-- -3'
miRNA:   3'- guuuuACG-GCCGU----CGCCGUGGCGugu -5'
24051 3' -56.4 NC_005262.1 + 6394 0.66 0.655563
Target:  5'- aCGAGAggcgGCCGGCgagcgcaagaaGGCGGCgaaggccgaGCUGCugAc -3'
miRNA:   3'- -GUUUUa---CGGCCG-----------UCGCCG---------UGGCGugU- -5'
24051 3' -56.4 NC_005262.1 + 5655 0.66 0.655563
Target:  5'- gAGGAUGCCGcGCAccaucgggaGGUACUGCACc -3'
miRNA:   3'- gUUUUACGGC-CGUcg-------CCGUGGCGUGu -5'
24051 3' -56.4 NC_005262.1 + 2322 0.66 0.654469
Target:  5'- cCGAGAcuuUGCCcuuacaGGgAGCGGCuucgacgcgauguGCCGCGCGa -3'
miRNA:   3'- -GUUUU---ACGG------CCgUCGCCG-------------UGGCGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.