miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24051 5' -56.1 NC_005262.1 + 58979 0.66 0.752635
Target:  5'- cGCCGgcgGCcucACGCCUcccgCGCCGUCGcgcUUCg -3'
miRNA:   3'- -UGGCa--UGa--UGCGGGa---GCGGCAGU---AGG- -5'
24051 5' -56.1 NC_005262.1 + 52264 0.66 0.752635
Target:  5'- cGCUGguc-AUGCCCUCGgCGUCGaggCCg -3'
miRNA:   3'- -UGGCaugaUGCGGGAGCgGCAGUa--GG- -5'
24051 5' -56.1 NC_005262.1 + 29590 0.66 0.752635
Target:  5'- cACCG----ACGCCCUCGCgGaUCG-CCa -3'
miRNA:   3'- -UGGCaugaUGCGGGAGCGgC-AGUaGG- -5'
24051 5' -56.1 NC_005262.1 + 14315 0.66 0.750616
Target:  5'- uGCuCGUGCguggucgacauCGCgCC-CGCCGUCAgugCCg -3'
miRNA:   3'- -UG-GCAUGau---------GCG-GGaGCGGCAGUa--GG- -5'
24051 5' -56.1 NC_005262.1 + 2662 0.66 0.742495
Target:  5'- gGCCGccgGCUcgucuccgagACGUUCUCGCggauCGUCGUCUa -3'
miRNA:   3'- -UGGCa--UGA----------UGCGGGAGCG----GCAGUAGG- -5'
24051 5' -56.1 NC_005262.1 + 22922 0.66 0.742495
Target:  5'- aGCCG-ACgaGCGCCUUCGCCG-CGa-- -3'
miRNA:   3'- -UGGCaUGa-UGCGGGAGCGGCaGUagg -5'
24051 5' -56.1 NC_005262.1 + 36213 0.66 0.742495
Target:  5'- gGCgGUGCU-CG-CCUCGCCG-UAUCg -3'
miRNA:   3'- -UGgCAUGAuGCgGGAGCGGCaGUAGg -5'
24051 5' -56.1 NC_005262.1 + 49800 0.66 0.721907
Target:  5'- cGCCGguuCgcCGCCCggcaCGCCGUCgcgGUUCa -3'
miRNA:   3'- -UGGCau-GauGCGGGa---GCGGCAG---UAGG- -5'
24051 5' -56.1 NC_005262.1 + 26894 0.66 0.721907
Target:  5'- gGCCGgc--GCGUCCgUUGUCGaUCAUCCg -3'
miRNA:   3'- -UGGCaugaUGCGGG-AGCGGC-AGUAGG- -5'
24051 5' -56.1 NC_005262.1 + 47006 0.66 0.721907
Target:  5'- uCCaGgcUUGCGCCUUCGCCGgaUCGcCCu -3'
miRNA:   3'- uGG-CauGAUGCGGGAGCGGC--AGUaGG- -5'
24051 5' -56.1 NC_005262.1 + 60722 0.66 0.718787
Target:  5'- cGCgGUGCU-CGCCgCUCGCCagcgugcgcauggcGUUcgCCg -3'
miRNA:   3'- -UGgCAUGAuGCGG-GAGCGG--------------CAGuaGG- -5'
24051 5' -56.1 NC_005262.1 + 230 0.66 0.71566
Target:  5'- uGCCGUACgGCGUCagcggauucgucaggCUCgGUCGuUCAUCCg -3'
miRNA:   3'- -UGGCAUGaUGCGG---------------GAG-CGGC-AGUAGG- -5'
24051 5' -56.1 NC_005262.1 + 32863 0.66 0.71148
Target:  5'- cGCaCGUGCgGCGCCgagcugUUCGCCG-CGUCg -3'
miRNA:   3'- -UG-GCAUGaUGCGG------GAGCGGCaGUAGg -5'
24051 5' -56.1 NC_005262.1 + 28444 0.66 0.71148
Target:  5'- cGCCGUGCU-CGCCgugUCGCCGaUgAUgCg -3'
miRNA:   3'- -UGGCAUGAuGCGGg--AGCGGC-AgUAgG- -5'
24051 5' -56.1 NC_005262.1 + 2665 0.66 0.71148
Target:  5'- cGCCGgGCgGCGUCCUgGCCGcCGUa- -3'
miRNA:   3'- -UGGCaUGaUGCGGGAgCGGCaGUAgg -5'
24051 5' -56.1 NC_005262.1 + 58534 0.66 0.71148
Target:  5'- cGCCGcGC-ACGCCU--GCCGgggCGUCCu -3'
miRNA:   3'- -UGGCaUGaUGCGGGagCGGCa--GUAGG- -5'
24051 5' -56.1 NC_005262.1 + 25296 0.66 0.71148
Target:  5'- gGCaGcACga-GCCCuUCGUCGUCGUCCu -3'
miRNA:   3'- -UGgCaUGaugCGGG-AGCGGCAGUAGG- -5'
24051 5' -56.1 NC_005262.1 + 27964 0.66 0.710434
Target:  5'- gGCgGU-CUugGCucggccgCCUUGCCGcCGUCCu -3'
miRNA:   3'- -UGgCAuGAugCG-------GGAGCGGCaGUAGG- -5'
24051 5' -56.1 NC_005262.1 + 25958 0.66 0.708337
Target:  5'- uGCCGUGCUuCG-CCUCGaUCGUCucgaaauacugccgGUCCu -3'
miRNA:   3'- -UGGCAUGAuGCgGGAGC-GGCAG--------------UAGG- -5'
24051 5' -56.1 NC_005262.1 + 27490 0.67 0.70098
Target:  5'- aGCgCGUu---CGCCCgUCGCCGaaGUCCa -3'
miRNA:   3'- -UG-GCAugauGCGGG-AGCGGCagUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.