miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24052 5' -52.8 NC_005262.1 + 16483 0.66 0.892264
Target:  5'- aUCCCG-GCgGCcGGCCGGggcgGGUUCAa- -3'
miRNA:   3'- -GGGGCaUGgCGuUCGGCU----UCAAGUag -5'
24052 5' -52.8 NC_005262.1 + 21433 0.66 0.892264
Target:  5'- gCCgaCGU-CCGCGAGCUGGucgAGUUCcgCc -3'
miRNA:   3'- -GGg-GCAuGGCGUUCGGCU---UCAAGuaG- -5'
24052 5' -52.8 NC_005262.1 + 12328 0.66 0.892264
Target:  5'- gCUCGUGCCGCAGcGCgCGgcGgcagCAUUg -3'
miRNA:   3'- gGGGCAUGGCGUU-CG-GCuuCaa--GUAG- -5'
24052 5' -52.8 NC_005262.1 + 2880 0.66 0.890093
Target:  5'- -gCCGUugcGCCGCuaucgccuucgaucAGGCUgguGAGGUUCAUCu -3'
miRNA:   3'- ggGGCA---UGGCG--------------UUCGG---CUUCAAGUAG- -5'
24052 5' -52.8 NC_005262.1 + 16796 0.66 0.884936
Target:  5'- gCCCGgACgGCGAGCUcauGGAGUUCc-- -3'
miRNA:   3'- gGGGCaUGgCGUUCGG---CUUCAAGuag -5'
24052 5' -52.8 NC_005262.1 + 38135 0.66 0.884936
Target:  5'- -gCCGUGCCGUucgucgugauGCCGAAGUcgaauUCAg- -3'
miRNA:   3'- ggGGCAUGGCGuu--------CGGCUUCA-----AGUag -5'
24052 5' -52.8 NC_005262.1 + 19199 0.66 0.881931
Target:  5'- gCCCG-ACCGCGacaAGCCGuuGGUgacggcguggcugCAUCa -3'
miRNA:   3'- gGGGCaUGGCGU---UCGGCu-UCAa------------GUAG- -5'
24052 5' -52.8 NC_005262.1 + 21005 0.66 0.877348
Target:  5'- uCCCCGagcaacGCCGCGAGCUacgggGAgauGGUgcuaUCGUCg -3'
miRNA:   3'- -GGGGCa-----UGGCGUUCGG-----CU---UCA----AGUAG- -5'
24052 5' -52.8 NC_005262.1 + 55104 0.66 0.877348
Target:  5'- gCCCGcgccgACCGCGuGCgCGAGGUaCAUg -3'
miRNA:   3'- gGGGCa----UGGCGUuCG-GCUUCAaGUAg -5'
24052 5' -52.8 NC_005262.1 + 51843 0.66 0.861416
Target:  5'- aUCCCGUGCUGCGcagccagcuuGCCGAgcuGGUcgAUCa -3'
miRNA:   3'- -GGGGCAUGGCGUu---------CGGCU---UCAagUAG- -5'
24052 5' -52.8 NC_005262.1 + 13075 0.66 0.861416
Target:  5'- aCCCaCGUcACgCGCGGGUCGcGGU-CGUCg -3'
miRNA:   3'- -GGG-GCA-UG-GCGUUCGGCuUCAaGUAG- -5'
24052 5' -52.8 NC_005262.1 + 48693 0.66 0.861416
Target:  5'- uCCUCGUcgagcugcgAUUGCAGGCCGAGGcggcucgcUUCGUUc -3'
miRNA:   3'- -GGGGCA---------UGGCGUUCGGCUUC--------AAGUAG- -5'
24052 5' -52.8 NC_005262.1 + 57493 0.67 0.853086
Target:  5'- -gCCG-GCCGaCGAggcGCCGAAGUUCAg- -3'
miRNA:   3'- ggGGCaUGGC-GUU---CGGCUUCAAGUag -5'
24052 5' -52.8 NC_005262.1 + 63874 0.67 0.844523
Target:  5'- gCCCCG-ACuCGCGagAGCCGggGca-AUCc -3'
miRNA:   3'- -GGGGCaUG-GCGU--UCGGCuuCaagUAG- -5'
24052 5' -52.8 NC_005262.1 + 2843 0.67 0.835737
Target:  5'- aCCCGccGCCGU--GCUGAAGcgCAUCc -3'
miRNA:   3'- gGGGCa-UGGCGuuCGGCUUCaaGUAG- -5'
24052 5' -52.8 NC_005262.1 + 44304 0.67 0.826736
Target:  5'- aCCCGUucauCCaguGCGGGuuGAGGcgCGUCa -3'
miRNA:   3'- gGGGCAu---GG---CGUUCggCUUCaaGUAG- -5'
24052 5' -52.8 NC_005262.1 + 34971 0.67 0.817529
Target:  5'- gCUCG-GCCGCAAGUCGAAGcUCc-- -3'
miRNA:   3'- gGGGCaUGGCGUUCGGCUUCaAGuag -5'
24052 5' -52.8 NC_005262.1 + 23864 0.67 0.817529
Target:  5'- gCCgGUGCCGCccGuCCGGucGUUCGUCc -3'
miRNA:   3'- gGGgCAUGGCGuuC-GGCUu-CAAGUAG- -5'
24052 5' -52.8 NC_005262.1 + 50354 0.67 0.808126
Target:  5'- gCCCGcgacgACCGCGAGCgGcgcaUUCGUCg -3'
miRNA:   3'- gGGGCa----UGGCGUUCGgCuuc-AAGUAG- -5'
24052 5' -52.8 NC_005262.1 + 40724 0.67 0.808126
Target:  5'- aCgCCGUGCCcguGGCCGggGU-CGUUg -3'
miRNA:   3'- -GgGGCAUGGcguUCGGCuuCAaGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.