miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24053 5' -64.1 NC_005262.1 + 13010 0.65 0.370812
Target:  5'- gGUgUACGCGcaggagcGCGCCaaGGGCUacgCGGUgCGCg -3'
miRNA:   3'- -CAgAUGCGC-------CGCGG--CCCGG---GCCA-GCG- -5'
24053 5' -64.1 NC_005262.1 + 50490 0.66 0.355655
Target:  5'- -gCUcCGCGGCGCUGaucgccgcgcGGUUCGcGUCGCc -3'
miRNA:   3'- caGAuGCGCCGCGGC----------CCGGGC-CAGCG- -5'
24053 5' -64.1 NC_005262.1 + 53459 0.66 0.347854
Target:  5'- gGUCUGCGgcaGGCGCaUGGcGCCgaucaGGuUCGCg -3'
miRNA:   3'- -CAGAUGCg--CCGCG-GCC-CGGg----CC-AGCG- -5'
24053 5' -64.1 NC_005262.1 + 60559 0.66 0.340177
Target:  5'- ---cACGCuGaCGCCGGcGCUCGG-CGCg -3'
miRNA:   3'- cagaUGCGcC-GCGGCC-CGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 22361 0.66 0.340177
Target:  5'- aUCcGCGUGGUGCggaGGGUguCCGG-CGCg -3'
miRNA:   3'- cAGaUGCGCCGCGg--CCCG--GGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 55623 0.66 0.332623
Target:  5'- -cCUGCGCaGCaagaaGCCGGGCCgcgcgcucgUGGcCGCg -3'
miRNA:   3'- caGAUGCGcCG-----CGGCCCGG---------GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 5323 0.66 0.332623
Target:  5'- aUCaGCGCGGCGUCGacGCCaCGGcgaUCGUg -3'
miRNA:   3'- cAGaUGCGCCGCGGCc-CGG-GCC---AGCG- -5'
24053 5' -64.1 NC_005262.1 + 29746 0.66 0.332623
Target:  5'- -gCUGCGCGG-GCgCGGGCggcaugCCGcUCGCu -3'
miRNA:   3'- caGAUGCGCCgCG-GCCCG------GGCcAGCG- -5'
24053 5' -64.1 NC_005262.1 + 57515 0.66 0.32593
Target:  5'- uUCaGCGUcGCGCCGGGCaucgaccgcgaucaGGUCGUa -3'
miRNA:   3'- cAGaUGCGcCGCGGCCCGgg------------CCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 10654 0.66 0.325193
Target:  5'- -gCUcCGCGGUacGCUGcGGCugcgcgcggCCGGUCGCg -3'
miRNA:   3'- caGAuGCGCCG--CGGC-CCG---------GGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 53452 0.66 0.325193
Target:  5'- ---aGCGCGGCGCCGGcGUCgaggacaaCGG-CGUg -3'
miRNA:   3'- cagaUGCGCCGCGGCC-CGG--------GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 23464 0.67 0.317887
Target:  5'- --aUGCGCGGCcuggacgaaugGCUGGGCgaGGUuCGCc -3'
miRNA:   3'- cagAUGCGCCG-----------CGGCCCGggCCA-GCG- -5'
24053 5' -64.1 NC_005262.1 + 13086 0.67 0.308574
Target:  5'- -cCUGCGCGuacacccacgucacGCG-CGGGUCgCGGUCGUc -3'
miRNA:   3'- caGAUGCGC--------------CGCgGCCCGG-GCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 48104 0.67 0.296713
Target:  5'- -gCUGCGUGGU-CUGGGUgUUGGUCGCg -3'
miRNA:   3'- caGAUGCGCCGcGGCCCG-GGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 48432 0.67 0.296713
Target:  5'- -----aGCaGCGCCGGGUC-GGUCGUg -3'
miRNA:   3'- cagaugCGcCGCGGCCCGGgCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 57680 0.67 0.289903
Target:  5'- uUCU-CGC-GCGCCGGGCgCGGcaaggUGCu -3'
miRNA:   3'- cAGAuGCGcCGCGGCCCGgGCCa----GCG- -5'
24053 5' -64.1 NC_005262.1 + 46542 0.67 0.289903
Target:  5'- ---aGCGCGGCGCCGGccgccgcuCCCGcGaCGCc -3'
miRNA:   3'- cagaUGCGCCGCGGCCc-------GGGC-CaGCG- -5'
24053 5' -64.1 NC_005262.1 + 43495 0.67 0.289903
Target:  5'- cGUCUACGCGGacgGCaaGGC--GGUCGCa -3'
miRNA:   3'- -CAGAUGCGCCg--CGgcCCGggCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 23861 0.67 0.283215
Target:  5'- -cUUGC-CGGUGCCGcccGUCCGGUCGUu -3'
miRNA:   3'- caGAUGcGCCGCGGCc--CGGGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 47696 0.67 0.283215
Target:  5'- gGUCUgACGCcaagcaccGCGCCGGGCggCGGcUCGCc -3'
miRNA:   3'- -CAGA-UGCGc-------CGCGGCCCGg-GCC-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.