Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 13086 | 0.67 | 0.308574 |
Target: 5'- -cCUGCGCGuacacccacgucacGCG-CGGGUCgCGGUCGUc -3' miRNA: 3'- caGAUGCGC--------------CGCgGCCCGG-GCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 47696 | 0.67 | 0.283215 |
Target: 5'- gGUCUgACGCcaagcaccGCGCCGGGCggCGGcUCGCc -3' miRNA: 3'- -CAGA-UGCGc-------CGCGGCCCGg-GCC-AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 41281 | 0.68 | 0.270209 |
Target: 5'- cUCgaaGCGGuCGCCGGGCgCGcaCGCg -3' miRNA: 3'- cAGaugCGCC-GCGGCCCGgGCcaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 53921 | 0.68 | 0.257073 |
Target: 5'- cGUCcGCGCcGCGCCGGuggucagcucgauGCCCGuGcCGCu -3' miRNA: 3'- -CAGaUGCGcCGCGGCC-------------CGGGC-CaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 11519 | 0.68 | 0.251606 |
Target: 5'- ---gGCGCGGCGUgucgcgcaccuuCGgcGGCCCGG-CGCg -3' miRNA: 3'- cagaUGCGCCGCG------------GC--CCGGGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 51470 | 0.68 | 0.251606 |
Target: 5'- gGUCagGCGCGGC-CUuGGCCgGcGUCGCg -3' miRNA: 3'- -CAGa-UGCGCCGcGGcCCGGgC-CAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 27469 | 0.68 | 0.245054 |
Target: 5'- aGUCcACGUucgcggaGGCGCCGacgacGGCCuCGGUCGg -3' miRNA: 3'- -CAGaUGCG-------CCGCGGC-----CCGG-GCCAGCg -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 44781 | 0.68 | 0.274705 |
Target: 5'- ---cGCGCGGCGaugccacguucggaUCGGGCgCGGgCGCg -3' miRNA: 3'- cagaUGCGCCGC--------------GGCCCGgGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 60481 | 0.68 | 0.239799 |
Target: 5'- -gCUGCGCGaucagggcgaGaCGCCGGGCCgcgCGG-CGCa -3' miRNA: 3'- caGAUGCGC----------C-GCGGCCCGG---GCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 28028 | 0.68 | 0.245644 |
Target: 5'- aUCUACGCgGGCGCCGaGagCUGG-CGCa -3' miRNA: 3'- cAGAUGCG-CCGCGGCcCg-GGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 12930 | 0.68 | 0.276651 |
Target: 5'- -cCUGCGCGGCGCgcugaaGGGCgugcgcgaCGGcaUCGCc -3' miRNA: 3'- caGAUGCGCCGCGg-----CCCGg-------GCC--AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 42239 | 0.69 | 0.222961 |
Target: 5'- aUCg--GCcGCGaCCGGGCCCGG-CGCc -3' miRNA: 3'- cAGaugCGcCGC-GGCCCGGGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 40655 | 0.69 | 0.217576 |
Target: 5'- -aCgguCGCGGCaccGCCGGuguuGCCCGG-CGCg -3' miRNA: 3'- caGau-GCGCCG---CGGCC----CGGGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 41844 | 0.69 | 0.207138 |
Target: 5'- -gCUGCGcCGGUGCCGGcauuCUgGGUCGUg -3' miRNA: 3'- caGAUGC-GCCGCGGCCc---GGgCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 34157 | 0.7 | 0.191818 |
Target: 5'- ---cGCGCGGCGugccaguCCGGGuUCUGGUCGUc -3' miRNA: 3'- cagaUGCGCCGC-------GGCCC-GGGCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 27645 | 0.7 | 0.18756 |
Target: 5'- -gCUGCGCGGCguccucGCCGGGgCUGaGcUCGCc -3' miRNA: 3'- caGAUGCGCCG------CGGCCCgGGC-C-AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 40759 | 0.7 | 0.18756 |
Target: 5'- gGUCguagACGCuauGCGCgUGGGUCgGGUCGCu -3' miRNA: 3'- -CAGa---UGCGc--CGCG-GCCCGGgCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 61804 | 0.7 | 0.18756 |
Target: 5'- -cCUGCGCGGCGCau-GCCuCGG-CGCu -3' miRNA: 3'- caGAUGCGCCGCGgccCGG-GCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 50377 | 0.7 | 0.178394 |
Target: 5'- aUCcGCGCGGcCGUcaCGGGCUCGGccggCGCg -3' miRNA: 3'- cAGaUGCGCC-GCG--GCCCGGGCCa---GCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 11415 | 0.71 | 0.153247 |
Target: 5'- ---cGCGCcGCGCCGGGCCgccgaaGGUgCGCg -3' miRNA: 3'- cagaUGCGcCGCGGCCCGGg-----CCA-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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