Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 42143 | 1.1 | 0.000161 |
Target: 5'- gGUCUACGCGGCGCCGGGCCCGGUCGCg -3' miRNA: 3'- -CAGAUGCGCCGCGGCCCGGGCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 2656 | 0.82 | 0.024873 |
Target: 5'- -cCUGCGCGGCGCCGGGCggcgucCUGGcCGCc -3' miRNA: 3'- caGAUGCGCCGCGGCCCG------GGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 50179 | 0.76 | 0.07167 |
Target: 5'- uGUUcGCGCGGCG-CGGGUUCGGUCGg -3' miRNA: 3'- -CAGaUGCGCCGCgGCCCGGGCCAGCg -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 49864 | 0.75 | 0.08636 |
Target: 5'- cGUCcgGCGCGGCagcgGCCGGaGCCuCGGgCGCg -3' miRNA: 3'- -CAGa-UGCGCCG----CGGCC-CGG-GCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 60594 | 0.75 | 0.08636 |
Target: 5'- cUCUugGCGGCcugcGCCGcgcGGCCCGGcgucUCGCc -3' miRNA: 3'- cAGAugCGCCG----CGGC---CCGGGCC----AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 9129 | 0.74 | 0.096 |
Target: 5'- -gCUAUGaggacCGGCGCCGGGCC-GGUCGg -3' miRNA: 3'- caGAUGC-----GCCGCGGCCCGGgCCAGCg -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 17997 | 0.74 | 0.103889 |
Target: 5'- uUCUucgACGUGGCuGCCGGGCCCGacgagacuGUCGa -3' miRNA: 3'- cAGA---UGCGCCG-CGGCCCGGGC--------CAGCg -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 43137 | 0.74 | 0.103889 |
Target: 5'- ---cGCGCGGUGCC-GGCCgGGUCGa -3' miRNA: 3'- cagaUGCGCCGCGGcCCGGgCCAGCg -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 59224 | 0.73 | 0.124726 |
Target: 5'- ---cGCGCGGCGaCGcGGCCCGGccgguUCGCc -3' miRNA: 3'- cagaUGCGCCGCgGC-CCGGGCC-----AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 46550 | 0.73 | 0.118406 |
Target: 5'- cGUCguggccgGCGCGGCauUCGGGUCCGG-CGCg -3' miRNA: 3'- -CAGa------UGCGCCGc-GGCCCGGGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 34113 | 0.73 | 0.121528 |
Target: 5'- aUCgACGCGGCGCaCGaugcGGCCCGG-CGUc -3' miRNA: 3'- cAGaUGCGCCGCG-GC----CCGGGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 4222 | 0.73 | 0.115359 |
Target: 5'- ---cACGCGGCGCCGuuuuuuuauGCCCGGcuuUCGCg -3' miRNA: 3'- cagaUGCGCCGCGGCc--------CGGGCC---AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 41503 | 0.72 | 0.141917 |
Target: 5'- aGUCgGCGCauacgaGGUGCCGGcGCCgacgaugaagCGGUCGCg -3' miRNA: 3'- -CAGaUGCG------CCGCGGCC-CGG----------GCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 21764 | 0.72 | 0.141917 |
Target: 5'- ---aGCGCGGCGCCGccGCUCaGGUUGCg -3' miRNA: 3'- cagaUGCGCCGCGGCc-CGGG-CCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 48168 | 0.72 | 0.138313 |
Target: 5'- ---cGCGuCGGCGCCGGGCggCUcGUCGCg -3' miRNA: 3'- cagaUGC-GCCGCGGCCCG--GGcCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 49096 | 0.72 | 0.138313 |
Target: 5'- -gUUACGaUGGCGCCGGGCauGGugcUCGCg -3' miRNA: 3'- caGAUGC-GCCGCGGCCCGggCC---AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 10976 | 0.72 | 0.138313 |
Target: 5'- uGUCg--GC-GCGCCGGGaacgCCGGUCGCg -3' miRNA: 3'- -CAGaugCGcCGCGGCCCg---GGCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 43980 | 0.72 | 0.134794 |
Target: 5'- cUCUGCGCGugauCGCgCGGGCgaUGGUCGCu -3' miRNA: 3'- cAGAUGCGCc---GCG-GCCCGg-GCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 5526 | 0.71 | 0.169629 |
Target: 5'- gGUC-AUGCcGCGCCGGGacaucgaaaagaCCCGGcUCGCg -3' miRNA: 3'- -CAGaUGCGcCGCGGCCC------------GGGCC-AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 51968 | 0.71 | 0.169629 |
Target: 5'- uUCg--GCGGCGUC-GGCUCGGUCGUg -3' miRNA: 3'- cAGaugCGCCGCGGcCCGGGCCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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