miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24053 5' -64.1 NC_005262.1 + 42143 1.1 0.000161
Target:  5'- gGUCUACGCGGCGCCGGGCCCGGUCGCg -3'
miRNA:   3'- -CAGAUGCGCCGCGGCCCGGGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 2656 0.82 0.024873
Target:  5'- -cCUGCGCGGCGCCGGGCggcgucCUGGcCGCc -3'
miRNA:   3'- caGAUGCGCCGCGGCCCG------GGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 50179 0.76 0.07167
Target:  5'- uGUUcGCGCGGCG-CGGGUUCGGUCGg -3'
miRNA:   3'- -CAGaUGCGCCGCgGCCCGGGCCAGCg -5'
24053 5' -64.1 NC_005262.1 + 49864 0.75 0.08636
Target:  5'- cGUCcgGCGCGGCagcgGCCGGaGCCuCGGgCGCg -3'
miRNA:   3'- -CAGa-UGCGCCG----CGGCC-CGG-GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 60594 0.75 0.08636
Target:  5'- cUCUugGCGGCcugcGCCGcgcGGCCCGGcgucUCGCc -3'
miRNA:   3'- cAGAugCGCCG----CGGC---CCGGGCC----AGCG- -5'
24053 5' -64.1 NC_005262.1 + 9129 0.74 0.096
Target:  5'- -gCUAUGaggacCGGCGCCGGGCC-GGUCGg -3'
miRNA:   3'- caGAUGC-----GCCGCGGCCCGGgCCAGCg -5'
24053 5' -64.1 NC_005262.1 + 17997 0.74 0.103889
Target:  5'- uUCUucgACGUGGCuGCCGGGCCCGacgagacuGUCGa -3'
miRNA:   3'- cAGA---UGCGCCG-CGGCCCGGGC--------CAGCg -5'
24053 5' -64.1 NC_005262.1 + 43137 0.74 0.103889
Target:  5'- ---cGCGCGGUGCC-GGCCgGGUCGa -3'
miRNA:   3'- cagaUGCGCCGCGGcCCGGgCCAGCg -5'
24053 5' -64.1 NC_005262.1 + 4222 0.73 0.115359
Target:  5'- ---cACGCGGCGCCGuuuuuuuauGCCCGGcuuUCGCg -3'
miRNA:   3'- cagaUGCGCCGCGGCc--------CGGGCC---AGCG- -5'
24053 5' -64.1 NC_005262.1 + 46550 0.73 0.118406
Target:  5'- cGUCguggccgGCGCGGCauUCGGGUCCGG-CGCg -3'
miRNA:   3'- -CAGa------UGCGCCGc-GGCCCGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 34113 0.73 0.121528
Target:  5'- aUCgACGCGGCGCaCGaugcGGCCCGG-CGUc -3'
miRNA:   3'- cAGaUGCGCCGCG-GC----CCGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 59224 0.73 0.124726
Target:  5'- ---cGCGCGGCGaCGcGGCCCGGccgguUCGCc -3'
miRNA:   3'- cagaUGCGCCGCgGC-CCGGGCC-----AGCG- -5'
24053 5' -64.1 NC_005262.1 + 43980 0.72 0.134794
Target:  5'- cUCUGCGCGugauCGCgCGGGCgaUGGUCGCu -3'
miRNA:   3'- cAGAUGCGCc---GCG-GCCCGg-GCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 48168 0.72 0.138313
Target:  5'- ---cGCGuCGGCGCCGGGCggCUcGUCGCg -3'
miRNA:   3'- cagaUGC-GCCGCGGCCCG--GGcCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 49096 0.72 0.138313
Target:  5'- -gUUACGaUGGCGCCGGGCauGGugcUCGCg -3'
miRNA:   3'- caGAUGC-GCCGCGGCCCGggCC---AGCG- -5'
24053 5' -64.1 NC_005262.1 + 10976 0.72 0.138313
Target:  5'- uGUCg--GC-GCGCCGGGaacgCCGGUCGCg -3'
miRNA:   3'- -CAGaugCGcCGCGGCCCg---GGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 21764 0.72 0.141917
Target:  5'- ---aGCGCGGCGCCGccGCUCaGGUUGCg -3'
miRNA:   3'- cagaUGCGCCGCGGCc-CGGG-CCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 41503 0.72 0.141917
Target:  5'- aGUCgGCGCauacgaGGUGCCGGcGCCgacgaugaagCGGUCGCg -3'
miRNA:   3'- -CAGaUGCG------CCGCGGCC-CGG----------GCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 46676 0.71 0.149
Target:  5'- cGUCUGCGgcgaggaCGGCGCUGGcGUCgUGGUCGUc -3'
miRNA:   3'- -CAGAUGC-------GCCGCGGCC-CGG-GCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 36530 0.71 0.149382
Target:  5'- gGUCgGCGCGGCGaCUGGGauuaUCGGgCGCa -3'
miRNA:   3'- -CAGaUGCGCCGC-GGCCCg---GGCCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.