Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 13010 | 0.65 | 0.370812 |
Target: 5'- gGUgUACGCGcaggagcGCGCCaaGGGCUacgCGGUgCGCg -3' miRNA: 3'- -CAgAUGCGC-------CGCGG--CCCGG---GCCA-GCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 50490 | 0.66 | 0.355655 |
Target: 5'- -gCUcCGCGGCGCUGaucgccgcgcGGUUCGcGUCGCc -3' miRNA: 3'- caGAuGCGCCGCGGC----------CCGGGC-CAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 53459 | 0.66 | 0.347854 |
Target: 5'- gGUCUGCGgcaGGCGCaUGGcGCCgaucaGGuUCGCg -3' miRNA: 3'- -CAGAUGCg--CCGCG-GCC-CGGg----CC-AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 60559 | 0.66 | 0.340177 |
Target: 5'- ---cACGCuGaCGCCGGcGCUCGG-CGCg -3' miRNA: 3'- cagaUGCGcC-GCGGCC-CGGGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 22361 | 0.66 | 0.340177 |
Target: 5'- aUCcGCGUGGUGCggaGGGUguCCGG-CGCg -3' miRNA: 3'- cAGaUGCGCCGCGg--CCCG--GGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 55623 | 0.66 | 0.332623 |
Target: 5'- -cCUGCGCaGCaagaaGCCGGGCCgcgcgcucgUGGcCGCg -3' miRNA: 3'- caGAUGCGcCG-----CGGCCCGG---------GCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 5323 | 0.66 | 0.332623 |
Target: 5'- aUCaGCGCGGCGUCGacGCCaCGGcgaUCGUg -3' miRNA: 3'- cAGaUGCGCCGCGGCc-CGG-GCC---AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 29746 | 0.66 | 0.332623 |
Target: 5'- -gCUGCGCGG-GCgCGGGCggcaugCCGcUCGCu -3' miRNA: 3'- caGAUGCGCCgCG-GCCCG------GGCcAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 57515 | 0.66 | 0.32593 |
Target: 5'- uUCaGCGUcGCGCCGGGCaucgaccgcgaucaGGUCGUa -3' miRNA: 3'- cAGaUGCGcCGCGGCCCGgg------------CCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 10654 | 0.66 | 0.325193 |
Target: 5'- -gCUcCGCGGUacGCUGcGGCugcgcgcggCCGGUCGCg -3' miRNA: 3'- caGAuGCGCCG--CGGC-CCG---------GGCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 53452 | 0.66 | 0.325193 |
Target: 5'- ---aGCGCGGCGCCGGcGUCgaggacaaCGG-CGUg -3' miRNA: 3'- cagaUGCGCCGCGGCC-CGG--------GCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 23464 | 0.67 | 0.317887 |
Target: 5'- --aUGCGCGGCcuggacgaaugGCUGGGCgaGGUuCGCc -3' miRNA: 3'- cagAUGCGCCG-----------CGGCCCGggCCA-GCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 13086 | 0.67 | 0.308574 |
Target: 5'- -cCUGCGCGuacacccacgucacGCG-CGGGUCgCGGUCGUc -3' miRNA: 3'- caGAUGCGC--------------CGCgGCCCGG-GCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 48104 | 0.67 | 0.296713 |
Target: 5'- -gCUGCGUGGU-CUGGGUgUUGGUCGCg -3' miRNA: 3'- caGAUGCGCCGcGGCCCG-GGCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 48432 | 0.67 | 0.296713 |
Target: 5'- -----aGCaGCGCCGGGUC-GGUCGUg -3' miRNA: 3'- cagaugCGcCGCGGCCCGGgCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 57680 | 0.67 | 0.289903 |
Target: 5'- uUCU-CGC-GCGCCGGGCgCGGcaaggUGCu -3' miRNA: 3'- cAGAuGCGcCGCGGCCCGgGCCa----GCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 46542 | 0.67 | 0.289903 |
Target: 5'- ---aGCGCGGCGCCGGccgccgcuCCCGcGaCGCc -3' miRNA: 3'- cagaUGCGCCGCGGCCc-------GGGC-CaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 43495 | 0.67 | 0.289903 |
Target: 5'- cGUCUACGCGGacgGCaaGGC--GGUCGCa -3' miRNA: 3'- -CAGAUGCGCCg--CGgcCCGggCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 23861 | 0.67 | 0.283215 |
Target: 5'- -cUUGC-CGGUGCCGcccGUCCGGUCGUu -3' miRNA: 3'- caGAUGcGCCGCGGCc--CGGGCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 47696 | 0.67 | 0.283215 |
Target: 5'- gGUCUgACGCcaagcaccGCGCCGGGCggCGGcUCGCc -3' miRNA: 3'- -CAGA-UGCGc-------CGCGGCCCGg-GCC-AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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