miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24053 5' -64.1 NC_005262.1 + 47696 0.67 0.283215
Target:  5'- gGUCUgACGCcaagcaccGCGCCGGGCggCGGcUCGCc -3'
miRNA:   3'- -CAGA-UGCGc-------CGCGGCCCGg-GCC-AGCG- -5'
24053 5' -64.1 NC_005262.1 + 42332 0.67 0.283215
Target:  5'- aGUgaGCGCGGCGCUcGGCaUCGGaacCGCg -3'
miRNA:   3'- -CAgaUGCGCCGCGGcCCG-GGCCa--GCG- -5'
24053 5' -64.1 NC_005262.1 + 12930 0.68 0.276651
Target:  5'- -cCUGCGCGGCGCgcugaaGGGCgugcgcgaCGGcaUCGCc -3'
miRNA:   3'- caGAUGCGCCGCGg-----CCCGg-------GCC--AGCG- -5'
24053 5' -64.1 NC_005262.1 + 44781 0.68 0.274705
Target:  5'- ---cGCGCGGCGaugccacguucggaUCGGGCgCGGgCGCg -3'
miRNA:   3'- cagaUGCGCCGC--------------GGCCCGgGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 41281 0.68 0.270209
Target:  5'- cUCgaaGCGGuCGCCGGGCgCGcaCGCg -3'
miRNA:   3'- cAGaugCGCC-GCGGCCCGgGCcaGCG- -5'
24053 5' -64.1 NC_005262.1 + 53921 0.68 0.257073
Target:  5'- cGUCcGCGCcGCGCCGGuggucagcucgauGCCCGuGcCGCu -3'
miRNA:   3'- -CAGaUGCGcCGCGGCC-------------CGGGC-CaGCG- -5'
24053 5' -64.1 NC_005262.1 + 51470 0.68 0.251606
Target:  5'- gGUCagGCGCGGC-CUuGGCCgGcGUCGCg -3'
miRNA:   3'- -CAGa-UGCGCCGcGGcCCGGgC-CAGCG- -5'
24053 5' -64.1 NC_005262.1 + 11519 0.68 0.251606
Target:  5'- ---gGCGCGGCGUgucgcgcaccuuCGgcGGCCCGG-CGCg -3'
miRNA:   3'- cagaUGCGCCGCG------------GC--CCGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 28028 0.68 0.245644
Target:  5'- aUCUACGCgGGCGCCGaGagCUGG-CGCa -3'
miRNA:   3'- cAGAUGCG-CCGCGGCcCg-GGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 27469 0.68 0.245054
Target:  5'- aGUCcACGUucgcggaGGCGCCGacgacGGCCuCGGUCGg -3'
miRNA:   3'- -CAGaUGCG-------CCGCGGC-----CCGG-GCCAGCg -5'
24053 5' -64.1 NC_005262.1 + 60481 0.68 0.239799
Target:  5'- -gCUGCGCGaucagggcgaGaCGCCGGGCCgcgCGG-CGCa -3'
miRNA:   3'- caGAUGCGC----------C-GCGGCCCGG---GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 42239 0.69 0.222961
Target:  5'- aUCg--GCcGCGaCCGGGCCCGG-CGCc -3'
miRNA:   3'- cAGaugCGcCGC-GGCCCGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 40655 0.69 0.217576
Target:  5'- -aCgguCGCGGCaccGCCGGuguuGCCCGG-CGCg -3'
miRNA:   3'- caGau-GCGCCG---CGGCC----CGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 41844 0.69 0.207138
Target:  5'- -gCUGCGcCGGUGCCGGcauuCUgGGUCGUg -3'
miRNA:   3'- caGAUGC-GCCGCGGCCc---GGgCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 34157 0.7 0.191818
Target:  5'- ---cGCGCGGCGugccaguCCGGGuUCUGGUCGUc -3'
miRNA:   3'- cagaUGCGCCGC-------GGCCC-GGGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 61804 0.7 0.18756
Target:  5'- -cCUGCGCGGCGCau-GCCuCGG-CGCu -3'
miRNA:   3'- caGAUGCGCCGCGgccCGG-GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 40759 0.7 0.18756
Target:  5'- gGUCguagACGCuauGCGCgUGGGUCgGGUCGCu -3'
miRNA:   3'- -CAGa---UGCGc--CGCG-GCCCGGgCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 27645 0.7 0.18756
Target:  5'- -gCUGCGCGGCguccucGCCGGGgCUGaGcUCGCc -3'
miRNA:   3'- caGAUGCGCCG------CGGCCCgGGC-C-AGCG- -5'
24053 5' -64.1 NC_005262.1 + 50377 0.7 0.178394
Target:  5'- aUCcGCGCGGcCGUcaCGGGCUCGGccggCGCg -3'
miRNA:   3'- cAGaUGCGCC-GCG--GCCCGGGCCa---GCG- -5'
24053 5' -64.1 NC_005262.1 + 51968 0.71 0.169629
Target:  5'- uUCg--GCGGCGUC-GGCUCGGUCGUg -3'
miRNA:   3'- cAGaugCGCCGCGGcCCGGGCCAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.