Results 1 - 20 of 64 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 2656 | 0.82 | 0.024873 |
Target: 5'- -cCUGCGCGGCGCCGGGCggcgucCUGGcCGCc -3' miRNA: 3'- caGAUGCGCCGCGGCCCG------GGCCaGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 4222 | 0.73 | 0.115359 |
Target: 5'- ---cACGCGGCGCCGuuuuuuuauGCCCGGcuuUCGCg -3' miRNA: 3'- cagaUGCGCCGCGGCc--------CGGGCC---AGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 5323 | 0.66 | 0.332623 |
Target: 5'- aUCaGCGCGGCGUCGacGCCaCGGcgaUCGUg -3' miRNA: 3'- cAGaUGCGCCGCGGCc-CGG-GCC---AGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 5526 | 0.71 | 0.169629 |
Target: 5'- gGUC-AUGCcGCGCCGGGacaucgaaaagaCCCGGcUCGCg -3' miRNA: 3'- -CAGaUGCGcCGCGGCCC------------GGGCC-AGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 9129 | 0.74 | 0.096 |
Target: 5'- -gCUAUGaggacCGGCGCCGGGCC-GGUCGg -3' miRNA: 3'- caGAUGC-----GCCGCGGCCCGGgCCAGCg -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 10654 | 0.66 | 0.325193 |
Target: 5'- -gCUcCGCGGUacGCUGcGGCugcgcgcggCCGGUCGCg -3' miRNA: 3'- caGAuGCGCCG--CGGC-CCG---------GGCCAGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 10976 | 0.72 | 0.138313 |
Target: 5'- uGUCg--GC-GCGCCGGGaacgCCGGUCGCg -3' miRNA: 3'- -CAGaugCGcCGCGGCCCg---GGCCAGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 11415 | 0.71 | 0.153247 |
Target: 5'- ---cGCGCcGCGCCGGGCCgccgaaGGUgCGCg -3' miRNA: 3'- cagaUGCGcCGCGGCCCGGg-----CCA-GCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 11519 | 0.68 | 0.251606 |
Target: 5'- ---gGCGCGGCGUgucgcgcaccuuCGgcGGCCCGG-CGCg -3' miRNA: 3'- cagaUGCGCCGCG------------GC--CCGGGCCaGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 12930 | 0.68 | 0.276651 |
Target: 5'- -cCUGCGCGGCGCgcugaaGGGCgugcgcgaCGGcaUCGCc -3' miRNA: 3'- caGAUGCGCCGCGg-----CCCGg-------GCC--AGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 13010 | 0.65 | 0.370812 |
Target: 5'- gGUgUACGCGcaggagcGCGCCaaGGGCUacgCGGUgCGCg -3' miRNA: 3'- -CAgAUGCGC-------CGCGG--CCCGG---GCCA-GCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 13086 | 0.67 | 0.308574 |
Target: 5'- -cCUGCGCGuacacccacgucacGCG-CGGGUCgCGGUCGUc -3' miRNA: 3'- caGAUGCGC--------------CGCgGCCCGG-GCCAGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 17997 | 0.74 | 0.103889 |
Target: 5'- uUCUucgACGUGGCuGCCGGGCCCGacgagacuGUCGa -3' miRNA: 3'- cAGA---UGCGCCG-CGGCCCGGGC--------CAGCg -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 21764 | 0.72 | 0.141917 |
Target: 5'- ---aGCGCGGCGCCGccGCUCaGGUUGCg -3' miRNA: 3'- cagaUGCGCCGCGGCc-CGGG-CCAGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 22361 | 0.66 | 0.340177 |
Target: 5'- aUCcGCGUGGUGCggaGGGUguCCGG-CGCg -3' miRNA: 3'- cAGaUGCGCCGCGg--CCCG--GGCCaGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 23464 | 0.67 | 0.317887 |
Target: 5'- --aUGCGCGGCcuggacgaaugGCUGGGCgaGGUuCGCc -3' miRNA: 3'- cagAUGCGCCG-----------CGGCCCGggCCA-GCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 23861 | 0.67 | 0.283215 |
Target: 5'- -cUUGC-CGGUGCCGcccGUCCGGUCGUu -3' miRNA: 3'- caGAUGcGCCGCGGCc--CGGGCCAGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 27469 | 0.68 | 0.245054 |
Target: 5'- aGUCcACGUucgcggaGGCGCCGacgacGGCCuCGGUCGg -3' miRNA: 3'- -CAGaUGCG-------CCGCGGC-----CCGG-GCCAGCg -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 27645 | 0.7 | 0.18756 |
Target: 5'- -gCUGCGCGGCguccucGCCGGGgCUGaGcUCGCc -3' miRNA: 3'- caGAUGCGCCG------CGGCCCgGGC-C-AGCG- -5' |
|||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 28028 | 0.68 | 0.245644 |
Target: 5'- aUCUACGCgGGCGCCGaGagCUGG-CGCa -3' miRNA: 3'- cAGAUGCG-CCGCGGCcCg-GGCCaGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home