miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24053 5' -64.1 NC_005262.1 + 29746 0.66 0.332623
Target:  5'- -gCUGCGCGG-GCgCGGGCggcaugCCGcUCGCu -3'
miRNA:   3'- caGAUGCGCCgCG-GCCCG------GGCcAGCG- -5'
24053 5' -64.1 NC_005262.1 + 34113 0.73 0.121528
Target:  5'- aUCgACGCGGCGCaCGaugcGGCCCGG-CGUc -3'
miRNA:   3'- cAGaUGCGCCGCG-GC----CCGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 34157 0.7 0.191818
Target:  5'- ---cGCGCGGCGugccaguCCGGGuUCUGGUCGUc -3'
miRNA:   3'- cagaUGCGCCGC-------GGCCC-GGGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 36530 0.71 0.149382
Target:  5'- gGUCgGCGCGGCGaCUGGGauuaUCGGgCGCa -3'
miRNA:   3'- -CAGaUGCGCCGC-GGCCCg---GGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 40655 0.69 0.217576
Target:  5'- -aCgguCGCGGCaccGCCGGuguuGCCCGG-CGCg -3'
miRNA:   3'- caGau-GCGCCG---CGGCC----CGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 40759 0.7 0.18756
Target:  5'- gGUCguagACGCuauGCGCgUGGGUCgGGUCGCu -3'
miRNA:   3'- -CAGa---UGCGc--CGCG-GCCCGGgCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 41281 0.68 0.270209
Target:  5'- cUCgaaGCGGuCGCCGGGCgCGcaCGCg -3'
miRNA:   3'- cAGaugCGCC-GCGGCCCGgGCcaGCG- -5'
24053 5' -64.1 NC_005262.1 + 41503 0.72 0.141917
Target:  5'- aGUCgGCGCauacgaGGUGCCGGcGCCgacgaugaagCGGUCGCg -3'
miRNA:   3'- -CAGaUGCG------CCGCGGCC-CGG----------GCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 41844 0.69 0.207138
Target:  5'- -gCUGCGcCGGUGCCGGcauuCUgGGUCGUg -3'
miRNA:   3'- caGAUGC-GCCGCGGCCc---GGgCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 42143 1.1 0.000161
Target:  5'- gGUCUACGCGGCGCCGGGCCCGGUCGCg -3'
miRNA:   3'- -CAGAUGCGCCGCGGCCCGGGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 42239 0.69 0.222961
Target:  5'- aUCg--GCcGCGaCCGGGCCCGG-CGCc -3'
miRNA:   3'- cAGaugCGcCGC-GGCCCGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 42332 0.67 0.283215
Target:  5'- aGUgaGCGCGGCGCUcGGCaUCGGaacCGCg -3'
miRNA:   3'- -CAgaUGCGCCGCGGcCCG-GGCCa--GCG- -5'
24053 5' -64.1 NC_005262.1 + 43137 0.74 0.103889
Target:  5'- ---cGCGCGGUGCC-GGCCgGGUCGa -3'
miRNA:   3'- cagaUGCGCCGCGGcCCGGgCCAGCg -5'
24053 5' -64.1 NC_005262.1 + 43495 0.67 0.289903
Target:  5'- cGUCUACGCGGacgGCaaGGC--GGUCGCa -3'
miRNA:   3'- -CAGAUGCGCCg--CGgcCCGggCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 43980 0.72 0.134794
Target:  5'- cUCUGCGCGugauCGCgCGGGCgaUGGUCGCu -3'
miRNA:   3'- cAGAUGCGCc---GCG-GCCCGg-GCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 44781 0.68 0.274705
Target:  5'- ---cGCGCGGCGaugccacguucggaUCGGGCgCGGgCGCg -3'
miRNA:   3'- cagaUGCGCCGC--------------GGCCCGgGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 46542 0.67 0.289903
Target:  5'- ---aGCGCGGCGCCGGccgccgcuCCCGcGaCGCc -3'
miRNA:   3'- cagaUGCGCCGCGGCCc-------GGGC-CaGCG- -5'
24053 5' -64.1 NC_005262.1 + 46550 0.73 0.118406
Target:  5'- cGUCguggccgGCGCGGCauUCGGGUCCGG-CGCg -3'
miRNA:   3'- -CAGa------UGCGCCGc-GGCCCGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 46676 0.71 0.149
Target:  5'- cGUCUGCGgcgaggaCGGCGCUGGcGUCgUGGUCGUc -3'
miRNA:   3'- -CAGAUGC-------GCCGCGGCC-CGG-GCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 47696 0.67 0.283215
Target:  5'- gGUCUgACGCcaagcaccGCGCCGGGCggCGGcUCGCc -3'
miRNA:   3'- -CAGA-UGCGc-------CGCGGCCCGg-GCC-AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.