miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24053 5' -64.1 NC_005262.1 + 61804 0.7 0.18756
Target:  5'- -cCUGCGCGGCGCau-GCCuCGG-CGCu -3'
miRNA:   3'- caGAUGCGCCGCGgccCGG-GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 60594 0.75 0.08636
Target:  5'- cUCUugGCGGCcugcGCCGcgcGGCCCGGcgucUCGCc -3'
miRNA:   3'- cAGAugCGCCG----CGGC---CCGGGCC----AGCG- -5'
24053 5' -64.1 NC_005262.1 + 60559 0.66 0.340177
Target:  5'- ---cACGCuGaCGCCGGcGCUCGG-CGCg -3'
miRNA:   3'- cagaUGCGcC-GCGGCC-CGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 60481 0.68 0.239799
Target:  5'- -gCUGCGCGaucagggcgaGaCGCCGGGCCgcgCGG-CGCa -3'
miRNA:   3'- caGAUGCGC----------C-GCGGCCCGG---GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 59899 0.67 0.283215
Target:  5'- --aUACGUGGCGCCuGcGGgCCGGU-GCc -3'
miRNA:   3'- cagAUGCGCCGCGG-C-CCgGGCCAgCG- -5'
24053 5' -64.1 NC_005262.1 + 59463 0.71 0.161251
Target:  5'- -gCUGCGCGaGCGCCuGGaGCUCGG-CGUu -3'
miRNA:   3'- caGAUGCGC-CGCGG-CC-CGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 59224 0.73 0.124726
Target:  5'- ---cGCGCGGCGaCGcGGCCCGGccgguUCGCc -3'
miRNA:   3'- cagaUGCGCCGCgGC-CCGGGCC-----AGCG- -5'
24053 5' -64.1 NC_005262.1 + 57680 0.67 0.289903
Target:  5'- uUCU-CGC-GCGCCGGGCgCGGcaaggUGCu -3'
miRNA:   3'- cAGAuGCGcCGCGGCCCGgGCCa----GCG- -5'
24053 5' -64.1 NC_005262.1 + 57515 0.66 0.32593
Target:  5'- uUCaGCGUcGCGCCGGGCaucgaccgcgaucaGGUCGUa -3'
miRNA:   3'- cAGaUGCGcCGCGGCCCGgg------------CCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 55623 0.66 0.332623
Target:  5'- -cCUGCGCaGCaagaaGCCGGGCCgcgcgcucgUGGcCGCg -3'
miRNA:   3'- caGAUGCGcCG-----CGGCCCGG---------GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 54873 0.71 0.157203
Target:  5'- uUCUGCGCGaCGUCGuuGGCCuucuCGGUCGCc -3'
miRNA:   3'- cAGAUGCGCcGCGGC--CCGG----GCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 53921 0.68 0.257073
Target:  5'- cGUCcGCGCcGCGCCGGuggucagcucgauGCCCGuGcCGCu -3'
miRNA:   3'- -CAGaUGCGcCGCGGCC-------------CGGGC-CaGCG- -5'
24053 5' -64.1 NC_005262.1 + 53459 0.66 0.347854
Target:  5'- gGUCUGCGgcaGGCGCaUGGcGCCgaucaGGuUCGCg -3'
miRNA:   3'- -CAGAUGCg--CCGCG-GCC-CGGg----CC-AGCG- -5'
24053 5' -64.1 NC_005262.1 + 53452 0.66 0.325193
Target:  5'- ---aGCGCGGCGCCGGcGUCgaggacaaCGG-CGUg -3'
miRNA:   3'- cagaUGCGCCGCGGCC-CGG--------GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 51968 0.71 0.169629
Target:  5'- uUCg--GCGGCGUC-GGCUCGGUCGUg -3'
miRNA:   3'- cAGaugCGCCGCGGcCCGGGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 51470 0.68 0.251606
Target:  5'- gGUCagGCGCGGC-CUuGGCCgGcGUCGCg -3'
miRNA:   3'- -CAGa-UGCGCCGcGGcCCGGgC-CAGCG- -5'
24053 5' -64.1 NC_005262.1 + 50490 0.66 0.355655
Target:  5'- -gCUcCGCGGCGCUGaucgccgcgcGGUUCGcGUCGCc -3'
miRNA:   3'- caGAuGCGCCGCGGC----------CCGGGC-CAGCG- -5'
24053 5' -64.1 NC_005262.1 + 50377 0.7 0.178394
Target:  5'- aUCcGCGCGGcCGUcaCGGGCUCGGccggCGCg -3'
miRNA:   3'- cAGaUGCGCC-GCG--GCCCGGGCCa---GCG- -5'
24053 5' -64.1 NC_005262.1 + 50179 0.76 0.07167
Target:  5'- uGUUcGCGCGGCG-CGGGUUCGGUCGg -3'
miRNA:   3'- -CAGaUGCGCCGCgGCCCGGGCCAGCg -5'
24053 5' -64.1 NC_005262.1 + 49864 0.75 0.08636
Target:  5'- cGUCcgGCGCGGCagcgGCCGGaGCCuCGGgCGCg -3'
miRNA:   3'- -CAGa-UGCGCCG----CGGCC-CGG-GCCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.