miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24053 5' -64.1 NC_005262.1 + 57515 0.66 0.32593
Target:  5'- uUCaGCGUcGCGCCGGGCaucgaccgcgaucaGGUCGUa -3'
miRNA:   3'- cAGaUGCGcCGCGGCCCGgg------------CCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 12930 0.68 0.276651
Target:  5'- -cCUGCGCGGCGCgcugaaGGGCgugcgcgaCGGcaUCGCc -3'
miRNA:   3'- caGAUGCGCCGCGg-----CCCGg-------GCC--AGCG- -5'
24053 5' -64.1 NC_005262.1 + 47696 0.67 0.283215
Target:  5'- gGUCUgACGCcaagcaccGCGCCGGGCggCGGcUCGCc -3'
miRNA:   3'- -CAGA-UGCGc-------CGCGGCCCGg-GCC-AGCG- -5'
24053 5' -64.1 NC_005262.1 + 23861 0.67 0.283215
Target:  5'- -cUUGC-CGGUGCCGcccGUCCGGUCGUu -3'
miRNA:   3'- caGAUGcGCCGCGGCc--CGGGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 43495 0.67 0.289903
Target:  5'- cGUCUACGCGGacgGCaaGGC--GGUCGCa -3'
miRNA:   3'- -CAGAUGCGCCg--CGgcCCGggCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 57680 0.67 0.289903
Target:  5'- uUCU-CGC-GCGCCGGGCgCGGcaaggUGCu -3'
miRNA:   3'- cAGAuGCGcCGCGGCCCGgGCCa----GCG- -5'
24053 5' -64.1 NC_005262.1 + 46542 0.67 0.289903
Target:  5'- ---aGCGCGGCGCCGGccgccgcuCCCGcGaCGCc -3'
miRNA:   3'- cagaUGCGCCGCGGCCc-------GGGC-CaGCG- -5'
24053 5' -64.1 NC_005262.1 + 23464 0.67 0.317887
Target:  5'- --aUGCGCGGCcuggacgaaugGCUGGGCgaGGUuCGCc -3'
miRNA:   3'- cagAUGCGCCG-----------CGGCCCGggCCA-GCG- -5'
24053 5' -64.1 NC_005262.1 + 53452 0.66 0.325193
Target:  5'- ---aGCGCGGCGCCGGcGUCgaggacaaCGG-CGUg -3'
miRNA:   3'- cagaUGCGCCGCGGCC-CGG--------GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 28028 0.68 0.245644
Target:  5'- aUCUACGCgGGCGCCGaGagCUGG-CGCa -3'
miRNA:   3'- cAGAUGCG-CCGCGGCcCg-GGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 60481 0.68 0.239799
Target:  5'- -gCUGCGCGaucagggcgaGaCGCCGGGCCgcgCGG-CGCa -3'
miRNA:   3'- caGAUGCGC----------C-GCGGCCCGG---GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 61804 0.7 0.18756
Target:  5'- -cCUGCGCGGCGCau-GCCuCGG-CGCu -3'
miRNA:   3'- caGAUGCGCCGCGgccCGG-GCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 2656 0.82 0.024873
Target:  5'- -cCUGCGCGGCGCCGGGCggcgucCUGGcCGCc -3'
miRNA:   3'- caGAUGCGCCGCGGCCCG------GGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 9129 0.74 0.096
Target:  5'- -gCUAUGaggacCGGCGCCGGGCC-GGUCGg -3'
miRNA:   3'- caGAUGC-----GCCGCGGCCCGGgCCAGCg -5'
24053 5' -64.1 NC_005262.1 + 17997 0.74 0.103889
Target:  5'- uUCUucgACGUGGCuGCCGGGCCCGacgagacuGUCGa -3'
miRNA:   3'- cAGA---UGCGCCG-CGGCCCGGGC--------CAGCg -5'
24053 5' -64.1 NC_005262.1 + 43980 0.72 0.134794
Target:  5'- cUCUGCGCGugauCGCgCGGGCgaUGGUCGCu -3'
miRNA:   3'- cAGAUGCGCc---GCG-GCCCGg-GCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 10976 0.72 0.138313
Target:  5'- uGUCg--GC-GCGCCGGGaacgCCGGUCGCg -3'
miRNA:   3'- -CAGaugCGcCGCGGCCCg---GGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 49096 0.72 0.138313
Target:  5'- -gUUACGaUGGCGCCGGGCauGGugcUCGCg -3'
miRNA:   3'- caGAUGC-GCCGCGGCCCGggCC---AGCG- -5'
24053 5' -64.1 NC_005262.1 + 36530 0.71 0.149382
Target:  5'- gGUCgGCGCGGCGaCUGGGauuaUCGGgCGCa -3'
miRNA:   3'- -CAGaUGCGCCGC-GGCCCg---GGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 11415 0.71 0.153247
Target:  5'- ---cGCGCcGCGCCGGGCCgccgaaGGUgCGCg -3'
miRNA:   3'- cagaUGCGcCGCGGCCCGGg-----CCA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.