Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24053 | 5' | -64.1 | NC_005262.1 | + | 49096 | 0.72 | 0.138313 |
Target: 5'- -gUUACGaUGGCGCCGGGCauGGugcUCGCg -3' miRNA: 3'- caGAUGC-GCCGCGGCCCGggCC---AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 36530 | 0.71 | 0.149382 |
Target: 5'- gGUCgGCGCGGCGaCUGGGauuaUCGGgCGCa -3' miRNA: 3'- -CAGaUGCGCCGC-GGCCCg---GGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 11415 | 0.71 | 0.153247 |
Target: 5'- ---cGCGCcGCGCCGGGCCgccgaaGGUgCGCg -3' miRNA: 3'- cagaUGCGcCGCGGCCCGGg-----CCA-GCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 61804 | 0.7 | 0.18756 |
Target: 5'- -cCUGCGCGGCGCau-GCCuCGG-CGCu -3' miRNA: 3'- caGAUGCGCCGCGgccCGG-GCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 60481 | 0.68 | 0.239799 |
Target: 5'- -gCUGCGCGaucagggcgaGaCGCCGGGCCgcgCGG-CGCa -3' miRNA: 3'- caGAUGCGC----------C-GCGGCCCGG---GCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 42332 | 0.67 | 0.283215 |
Target: 5'- aGUgaGCGCGGCGCUcGGCaUCGGaacCGCg -3' miRNA: 3'- -CAgaUGCGCCGCGGcCCG-GGCCa--GCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 44781 | 0.68 | 0.274705 |
Target: 5'- ---cGCGCGGCGaugccacguucggaUCGGGCgCGGgCGCg -3' miRNA: 3'- cagaUGCGCCGC--------------GGCCCGgGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 41281 | 0.68 | 0.270209 |
Target: 5'- cUCgaaGCGGuCGCCGGGCgCGcaCGCg -3' miRNA: 3'- cAGaugCGCC-GCGGCCCGgGCcaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 53921 | 0.68 | 0.257073 |
Target: 5'- cGUCcGCGCcGCGCCGGuggucagcucgauGCCCGuGcCGCu -3' miRNA: 3'- -CAGaUGCGcCGCGGCC-------------CGGGC-CaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 11519 | 0.68 | 0.251606 |
Target: 5'- ---gGCGCGGCGUgucgcgcaccuuCGgcGGCCCGG-CGCg -3' miRNA: 3'- cagaUGCGCCGCG------------GC--CCGGGCCaGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 51470 | 0.68 | 0.251606 |
Target: 5'- gGUCagGCGCGGC-CUuGGCCgGcGUCGCg -3' miRNA: 3'- -CAGa-UGCGCCGcGGcCCGGgC-CAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 59899 | 0.67 | 0.283215 |
Target: 5'- --aUACGUGGCGCCuGcGGgCCGGU-GCc -3' miRNA: 3'- cagAUGCGCCGCGG-C-CCgGGCCAgCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 48432 | 0.67 | 0.296713 |
Target: 5'- -----aGCaGCGCCGGGUC-GGUCGUg -3' miRNA: 3'- cagaugCGcCGCGGCCCGGgCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 48104 | 0.67 | 0.296713 |
Target: 5'- -gCUGCGUGGU-CUGGGUgUUGGUCGCg -3' miRNA: 3'- caGAUGCGCCGcGGCCCG-GGCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 13086 | 0.67 | 0.308574 |
Target: 5'- -cCUGCGCGuacacccacgucacGCG-CGGGUCgCGGUCGUc -3' miRNA: 3'- caGAUGCGC--------------CGCgGCCCGG-GCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 10654 | 0.66 | 0.325193 |
Target: 5'- -gCUcCGCGGUacGCUGcGGCugcgcgcggCCGGUCGCg -3' miRNA: 3'- caGAuGCGCCG--CGGC-CCG---------GGCCAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 29746 | 0.66 | 0.332623 |
Target: 5'- -gCUGCGCGG-GCgCGGGCggcaugCCGcUCGCu -3' miRNA: 3'- caGAUGCGCCgCG-GCCCG------GGCcAGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 5323 | 0.66 | 0.332623 |
Target: 5'- aUCaGCGCGGCGUCGacGCCaCGGcgaUCGUg -3' miRNA: 3'- cAGaUGCGCCGCGGCc-CGG-GCC---AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 53459 | 0.66 | 0.347854 |
Target: 5'- gGUCUGCGgcaGGCGCaUGGcGCCgaucaGGuUCGCg -3' miRNA: 3'- -CAGAUGCg--CCGCG-GCC-CGGg----CC-AGCG- -5' |
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24053 | 5' | -64.1 | NC_005262.1 | + | 50179 | 0.76 | 0.07167 |
Target: 5'- uGUUcGCGCGGCG-CGGGUUCGGUCGg -3' miRNA: 3'- -CAGaUGCGCCGCgGCCCGGGCCAGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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