miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24053 5' -64.1 NC_005262.1 + 50490 0.66 0.355655
Target:  5'- -gCUcCGCGGCGCUGaucgccgcgcGGUUCGcGUCGCc -3'
miRNA:   3'- caGAuGCGCCGCGGC----------CCGGGC-CAGCG- -5'
24053 5' -64.1 NC_005262.1 + 40655 0.69 0.217576
Target:  5'- -aCgguCGCGGCaccGCCGGuguuGCCCGG-CGCg -3'
miRNA:   3'- caGau-GCGCCG---CGGCC----CGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 34157 0.7 0.191818
Target:  5'- ---cGCGCGGCGugccaguCCGGGuUCUGGUCGUc -3'
miRNA:   3'- cagaUGCGCCGC-------GGCCC-GGGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 50179 0.76 0.07167
Target:  5'- uGUUcGCGCGGCG-CGGGUUCGGUCGg -3'
miRNA:   3'- -CAGaUGCGCCGCgGCCCGGGCCAGCg -5'
24053 5' -64.1 NC_005262.1 + 10654 0.66 0.325193
Target:  5'- -gCUcCGCGGUacGCUGcGGCugcgcgcggCCGGUCGCg -3'
miRNA:   3'- caGAuGCGCCG--CGGC-CCG---------GGCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 13086 0.67 0.308574
Target:  5'- -cCUGCGCGuacacccacgucacGCG-CGGGUCgCGGUCGUc -3'
miRNA:   3'- caGAUGCGC--------------CGCgGCCCGG-GCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 48432 0.67 0.296713
Target:  5'- -----aGCaGCGCCGGGUC-GGUCGUg -3'
miRNA:   3'- cagaugCGcCGCGGCCCGGgCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 59899 0.67 0.283215
Target:  5'- --aUACGUGGCGCCuGcGGgCCGGU-GCc -3'
miRNA:   3'- cagAUGCGCCGCGG-C-CCgGGCCAgCG- -5'
24053 5' -64.1 NC_005262.1 + 41281 0.68 0.270209
Target:  5'- cUCgaaGCGGuCGCCGGGCgCGcaCGCg -3'
miRNA:   3'- cAGaugCGCC-GCGGCCCGgGCcaGCG- -5'
24053 5' -64.1 NC_005262.1 + 42239 0.69 0.222961
Target:  5'- aUCg--GCcGCGaCCGGGCCCGG-CGCc -3'
miRNA:   3'- cAGaugCGcCGC-GGCCCGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 11519 0.68 0.251606
Target:  5'- ---gGCGCGGCGUgucgcgcaccuuCGgcGGCCCGG-CGCg -3'
miRNA:   3'- cagaUGCGCCGCG------------GC--CCGGGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 44781 0.68 0.274705
Target:  5'- ---cGCGCGGCGaugccacguucggaUCGGGCgCGGgCGCg -3'
miRNA:   3'- cagaUGCGCCGC--------------GGCCCGgGCCaGCG- -5'
24053 5' -64.1 NC_005262.1 + 53459 0.66 0.347854
Target:  5'- gGUCUGCGgcaGGCGCaUGGcGCCgaucaGGuUCGCg -3'
miRNA:   3'- -CAGAUGCg--CCGCG-GCC-CGGg----CC-AGCG- -5'
24053 5' -64.1 NC_005262.1 + 51470 0.68 0.251606
Target:  5'- gGUCagGCGCGGC-CUuGGCCgGcGUCGCg -3'
miRNA:   3'- -CAGa-UGCGCCGcGGcCCGGgC-CAGCG- -5'
24053 5' -64.1 NC_005262.1 + 5323 0.66 0.332623
Target:  5'- aUCaGCGCGGCGUCGacGCCaCGGcgaUCGUg -3'
miRNA:   3'- cAGaUGCGCCGCGGCc-CGG-GCC---AGCG- -5'
24053 5' -64.1 NC_005262.1 + 42332 0.67 0.283215
Target:  5'- aGUgaGCGCGGCGCUcGGCaUCGGaacCGCg -3'
miRNA:   3'- -CAgaUGCGCCGCGGcCCG-GGCCa--GCG- -5'
24053 5' -64.1 NC_005262.1 + 27469 0.68 0.245054
Target:  5'- aGUCcACGUucgcggaGGCGCCGacgacGGCCuCGGUCGg -3'
miRNA:   3'- -CAGaUGCG-------CCGCGGC-----CCGG-GCCAGCg -5'
24053 5' -64.1 NC_005262.1 + 41844 0.69 0.207138
Target:  5'- -gCUGCGcCGGUGCCGGcauuCUgGGUCGUg -3'
miRNA:   3'- caGAUGC-GCCGCGGCCc---GGgCCAGCG- -5'
24053 5' -64.1 NC_005262.1 + 29746 0.66 0.332623
Target:  5'- -gCUGCGCGG-GCgCGGGCggcaugCCGcUCGCu -3'
miRNA:   3'- caGAUGCGCCgCG-GCCCG------GGCcAGCG- -5'
24053 5' -64.1 NC_005262.1 + 48104 0.67 0.296713
Target:  5'- -gCUGCGUGGU-CUGGGUgUUGGUCGCg -3'
miRNA:   3'- caGAUGCGCCGcGGCCCG-GGCCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.