Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24054 | 3' | -49 | NC_005262.1 | + | 45621 | 0.66 | 0.978265 |
Target: 5'- cCGccGGAaaaUUGCAguGCAaugcgcUCGUgGCGCUCg -3' miRNA: 3'- -GCuaCCU---AAUGU--UGU------AGCAgCGCGAG- -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 28989 | 0.66 | 0.978007 |
Target: 5'- --cUGGAUcGCGACGccggacacugcguUCGUCGUGCg- -3' miRNA: 3'- gcuACCUAaUGUUGU-------------AGCAGCGCGag -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 7524 | 0.66 | 0.97558 |
Target: 5'- uCGGgcaGGuucgGCGgcGCGUCGgCGCGCUCg -3' miRNA: 3'- -GCUa--CCuaa-UGU--UGUAGCaGCGCGAG- -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 42910 | 0.66 | 0.969497 |
Target: 5'- aCGAUGGcu-----CGUCGUCGCGUcgUCg -3' miRNA: 3'- -GCUACCuaauguuGUAGCAGCGCG--AG- -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 51977 | 0.66 | 0.969497 |
Target: 5'- uCGGUGccguucgGCGGCGUCGgcucggUCGUGCUCg -3' miRNA: 3'- -GCUACcuaa---UGUUGUAGC------AGCGCGAG- -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 54829 | 0.67 | 0.96608 |
Target: 5'- cCGAUGGAUUugGACcgacaCGcagCGCGC-Cg -3' miRNA: 3'- -GCUACCUAAugUUGua---GCa--GCGCGaG- -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 51300 | 0.67 | 0.96608 |
Target: 5'- cCGGUGcGAU--CAGCAUCGccCGCGCg- -3' miRNA: 3'- -GCUAC-CUAauGUUGUAGCa-GCGCGag -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 32708 | 0.67 | 0.96608 |
Target: 5'- aGGUGG---GCGACAUCaUCGaGCUCg -3' miRNA: 3'- gCUACCuaaUGUUGUAGcAGCgCGAG- -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 2462 | 0.68 | 0.944947 |
Target: 5'- aCGGUGGAcgUugAGCAUgcgCGUggugcCGCGCUUg -3' miRNA: 3'- -GCUACCUa-AugUUGUA---GCA-----GCGCGAG- -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 60720 | 0.68 | 0.940391 |
Target: 5'- gGAUGGAcgACGACAaggaccgcuggcUCGgcgaaggcugggagaCGCGCUCg -3' miRNA: 3'- gCUACCUaaUGUUGU------------AGCa--------------GCGCGAG- -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 49153 | 0.68 | 0.93987 |
Target: 5'- aCGGUGGGcgUGCAggccGCAUCGgccgcagcggCGCGCa- -3' miRNA: 3'- -GCUACCUa-AUGU----UGUAGCa---------GCGCGag -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 33278 | 0.68 | 0.93987 |
Target: 5'- gCGA-GGcgUACcGCAUCG-CGCGCa- -3' miRNA: 3'- -GCUaCCuaAUGuUGUAGCaGCGCGag -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 9041 | 0.68 | 0.934502 |
Target: 5'- gGAUGGGUggAguGCGUCGccCGCGCg- -3' miRNA: 3'- gCUACCUAa-UguUGUAGCa-GCGCGag -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 46217 | 0.68 | 0.928257 |
Target: 5'- uCGgcGGGUaaucauggcgaacUACGGCAUCGguaucggCGCGUUCg -3' miRNA: 3'- -GCuaCCUA-------------AUGUUGUAGCa------GCGCGAG- -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 58562 | 0.68 | 0.922882 |
Target: 5'- aGAUGGAUcgUGCcguccGACGUCGUgacgcCGCGCa- -3' miRNA: 3'- gCUACCUA--AUG-----UUGUAGCA-----GCGCGag -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 12610 | 0.7 | 0.888716 |
Target: 5'- -cAUGGAg-GCGAUcgCGUCGCGCg- -3' miRNA: 3'- gcUACCUaaUGUUGuaGCAGCGCGag -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 37857 | 0.72 | 0.800537 |
Target: 5'- uCGGUGGAUUcCcuGACAUCGgCGCGCcCg -3' miRNA: 3'- -GCUACCUAAuG--UUGUAGCaGCGCGaG- -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 16625 | 0.72 | 0.800537 |
Target: 5'- uCGAgcUGG---GCGAUAUCGUCGUGCUg -3' miRNA: 3'- -GCU--ACCuaaUGUUGUAGCAGCGCGAg -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 18511 | 0.72 | 0.790511 |
Target: 5'- aGAUGGAaa--GGCAa-GUCGCGCUCa -3' miRNA: 3'- gCUACCUaaugUUGUagCAGCGCGAG- -5' |
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24054 | 3' | -49 | NC_005262.1 | + | 52318 | 0.73 | 0.70501 |
Target: 5'- aCGAUGccGAUUGCGACGcaaugagcUCGUCGUGCa- -3' miRNA: 3'- -GCUAC--CUAAUGUUGU--------AGCAGCGCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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