miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 3' -49 NC_005262.1 + 54829 0.67 0.96608
Target:  5'- cCGAUGGAUUugGACcgacaCGcagCGCGC-Cg -3'
miRNA:   3'- -GCUACCUAAugUUGua---GCa--GCGCGaG- -5'
24054 3' -49 NC_005262.1 + 51977 0.66 0.969497
Target:  5'- uCGGUGccguucgGCGGCGUCGgcucggUCGUGCUCg -3'
miRNA:   3'- -GCUACcuaa---UGUUGUAGC------AGCGCGAG- -5'
24054 3' -49 NC_005262.1 + 42910 0.66 0.969497
Target:  5'- aCGAUGGcu-----CGUCGUCGCGUcgUCg -3'
miRNA:   3'- -GCUACCuaauguuGUAGCAGCGCG--AG- -5'
24054 3' -49 NC_005262.1 + 7524 0.66 0.97558
Target:  5'- uCGGgcaGGuucgGCGgcGCGUCGgCGCGCUCg -3'
miRNA:   3'- -GCUa--CCuaa-UGU--UGUAGCaGCGCGAG- -5'
24054 3' -49 NC_005262.1 + 28989 0.66 0.978007
Target:  5'- --cUGGAUcGCGACGccggacacugcguUCGUCGUGCg- -3'
miRNA:   3'- gcuACCUAaUGUUGU-------------AGCAGCGCGag -5'
24054 3' -49 NC_005262.1 + 45621 0.66 0.978265
Target:  5'- cCGccGGAaaaUUGCAguGCAaugcgcUCGUgGCGCUCg -3'
miRNA:   3'- -GCuaCCU---AAUGU--UGU------AGCAgCGCGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.