miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 3' -49 NC_005262.1 + 42720 1.12 0.003337
Target:  5'- aCGAUGGAUUACAACAUCGUCGCGCUCg -3'
miRNA:   3'- -GCUACCUAAUGUUGUAGCAGCGCGAG- -5'
24054 3' -49 NC_005262.1 + 7524 0.66 0.97558
Target:  5'- uCGGgcaGGuucgGCGgcGCGUCGgCGCGCUCg -3'
miRNA:   3'- -GCUa--CCuaa-UGU--UGUAGCaGCGCGAG- -5'
24054 3' -49 NC_005262.1 + 42910 0.66 0.969497
Target:  5'- aCGAUGGcu-----CGUCGUCGCGUcgUCg -3'
miRNA:   3'- -GCUACCuaauguuGUAGCAGCGCG--AG- -5'
24054 3' -49 NC_005262.1 + 54829 0.67 0.96608
Target:  5'- cCGAUGGAUUugGACcgacaCGcagCGCGC-Cg -3'
miRNA:   3'- -GCUACCUAAugUUGua---GCa--GCGCGaG- -5'
24054 3' -49 NC_005262.1 + 32708 0.67 0.96608
Target:  5'- aGGUGG---GCGACAUCaUCGaGCUCg -3'
miRNA:   3'- gCUACCuaaUGUUGUAGcAGCgCGAG- -5'
24054 3' -49 NC_005262.1 + 2462 0.68 0.944947
Target:  5'- aCGGUGGAcgUugAGCAUgcgCGUggugcCGCGCUUg -3'
miRNA:   3'- -GCUACCUa-AugUUGUA---GCA-----GCGCGAG- -5'
24054 3' -49 NC_005262.1 + 60720 0.68 0.940391
Target:  5'- gGAUGGAcgACGACAaggaccgcuggcUCGgcgaaggcugggagaCGCGCUCg -3'
miRNA:   3'- gCUACCUaaUGUUGU------------AGCa--------------GCGCGAG- -5'
24054 3' -49 NC_005262.1 + 49153 0.68 0.93987
Target:  5'- aCGGUGGGcgUGCAggccGCAUCGgccgcagcggCGCGCa- -3'
miRNA:   3'- -GCUACCUa-AUGU----UGUAGCa---------GCGCGag -5'
24054 3' -49 NC_005262.1 + 33278 0.68 0.93987
Target:  5'- gCGA-GGcgUACcGCAUCG-CGCGCa- -3'
miRNA:   3'- -GCUaCCuaAUGuUGUAGCaGCGCGag -5'
24054 3' -49 NC_005262.1 + 54540 0.76 0.557139
Target:  5'- aGAauUGGAUUccggccaGCGACGUCGcCGCGUUCg -3'
miRNA:   3'- gCU--ACCUAA-------UGUUGUAGCaGCGCGAG- -5'
24054 3' -49 NC_005262.1 + 18052 0.74 0.660032
Target:  5'- gCGA-GGAgUACGACAgucUCGUgaCGCGCUCg -3'
miRNA:   3'- -GCUaCCUaAUGUUGU---AGCA--GCGCGAG- -5'
24054 3' -49 NC_005262.1 + 24463 0.74 0.671347
Target:  5'- uCGAUGGcgcugcACGGCAcgagCGUCGCGCUUg -3'
miRNA:   3'- -GCUACCuaa---UGUUGUa---GCAGCGCGAG- -5'
24054 3' -49 NC_005262.1 + 16625 0.72 0.800537
Target:  5'- uCGAgcUGG---GCGAUAUCGUCGUGCUg -3'
miRNA:   3'- -GCU--ACCuaaUGUUGUAGCAGCGCGAg -5'
24054 3' -49 NC_005262.1 + 37857 0.72 0.800537
Target:  5'- uCGGUGGAUUcCcuGACAUCGgCGCGCcCg -3'
miRNA:   3'- -GCUACCUAAuG--UUGUAGCaGCGCGaG- -5'
24054 3' -49 NC_005262.1 + 46217 0.68 0.928257
Target:  5'- uCGgcGGGUaaucauggcgaacUACGGCAUCGguaucggCGCGUUCg -3'
miRNA:   3'- -GCuaCCUA-------------AUGUUGUAGCa------GCGCGAG- -5'
24054 3' -49 NC_005262.1 + 62795 0.76 0.579542
Target:  5'- gGGUGcgugcgcGAUUACc-CAUCGUCGCGCUCc -3'
miRNA:   3'- gCUAC-------CUAAUGuuGUAGCAGCGCGAG- -5'
24054 3' -49 NC_005262.1 + 28989 0.66 0.978007
Target:  5'- --cUGGAUcGCGACGccggacacugcguUCGUCGUGCg- -3'
miRNA:   3'- gcuACCUAaUGUUGU-------------AGCAGCGCGag -5'
24054 3' -49 NC_005262.1 + 51977 0.66 0.969497
Target:  5'- uCGGUGccguucgGCGGCGUCGgcucggUCGUGCUCg -3'
miRNA:   3'- -GCUACcuaa---UGUUGUAGC------AGCGCGAG- -5'
24054 3' -49 NC_005262.1 + 51300 0.67 0.96608
Target:  5'- cCGGUGcGAU--CAGCAUCGccCGCGCg- -3'
miRNA:   3'- -GCUAC-CUAauGUUGUAGCa-GCGCGag -5'
24054 3' -49 NC_005262.1 + 9041 0.68 0.934502
Target:  5'- gGAUGGGUggAguGCGUCGccCGCGCg- -3'
miRNA:   3'- gCUACCUAa-UguUGUAGCa-GCGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.