miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 29757 0.66 0.763174
Target:  5'- gGGUugGGCGGgcugCGcGGgCGCgGGCGGc -3'
miRNA:   3'- gCCGugCUGCUa---GCaCCaGCG-CUGCC- -5'
24054 5' -56.7 NC_005262.1 + 55165 0.66 0.763174
Target:  5'- cCGGcCGCGAacAUCaUGGUCGCgGACGa -3'
miRNA:   3'- -GCC-GUGCUgcUAGcACCAGCG-CUGCc -5'
24054 5' -56.7 NC_005262.1 + 41287 0.66 0.753364
Target:  5'- aCGGUGCucgaaGCGGUCGccgGGcgcgcacgcgaUCGCGGCGGu -3'
miRNA:   3'- -GCCGUGc----UGCUAGCa--CC-----------AGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 23706 0.66 0.753364
Target:  5'- cCGGCGC-ACGGUCGaccaCGCGGCGa -3'
miRNA:   3'- -GCCGUGcUGCUAGCaccaGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 49896 0.66 0.743442
Target:  5'- -cGCGCGGcCGAUCG-GGcCG-GACGGu -3'
miRNA:   3'- gcCGUGCU-GCUAGCaCCaGCgCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 55641 0.66 0.743442
Target:  5'- gGGcCGCG-CGcUCGUGGcCGCGucCGGc -3'
miRNA:   3'- gCC-GUGCuGCuAGCACCaGCGCu-GCC- -5'
24054 5' -56.7 NC_005262.1 + 48051 0.66 0.743442
Target:  5'- aGGCGCGAgaGGUCGU--UCGCGccuuCGGu -3'
miRNA:   3'- gCCGUGCUg-CUAGCAccAGCGCu---GCC- -5'
24054 5' -56.7 NC_005262.1 + 59590 0.66 0.743442
Target:  5'- uCGcGCGCGAcuaCGAUcaggcCGUGGUCGUGgGCGa -3'
miRNA:   3'- -GC-CGUGCU---GCUA-----GCACCAGCGC-UGCc -5'
24054 5' -56.7 NC_005262.1 + 28815 0.66 0.733417
Target:  5'- aCGGCGuccgGGCGcgCGgccUCGCGGCGGa -3'
miRNA:   3'- -GCCGUg---CUGCuaGCaccAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 5044 0.66 0.733417
Target:  5'- cCGGC-CGGCgccuGAUCGgcgGGcaggccCGCGGCGGc -3'
miRNA:   3'- -GCCGuGCUG----CUAGCa--CCa-----GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 4829 0.66 0.7233
Target:  5'- cCGGCGCGACGcagugccuuUCcgGUGGauucgcuugUCGCGGCGc -3'
miRNA:   3'- -GCCGUGCUGCu--------AG--CACC---------AGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 53208 0.67 0.713099
Target:  5'- gCGGCAUcGCGGuuuUCGUGaaGUCGcCGACGa -3'
miRNA:   3'- -GCCGUGcUGCU---AGCAC--CAGC-GCUGCc -5'
24054 5' -56.7 NC_005262.1 + 7452 0.67 0.713099
Target:  5'- aCGGCcCGACcGUCGUGGcgacgccuaagCGCGGCu- -3'
miRNA:   3'- -GCCGuGCUGcUAGCACCa----------GCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 12210 0.67 0.713099
Target:  5'- -aGCGCGGCGAUC-UGcUCGCGcgcACGGc -3'
miRNA:   3'- gcCGUGCUGCUAGcACcAGCGC---UGCC- -5'
24054 5' -56.7 NC_005262.1 + 12017 0.67 0.713099
Target:  5'- -uGCACGGCGcaAUC-UGGUCGCGcGCGu -3'
miRNA:   3'- gcCGUGCUGC--UAGcACCAGCGC-UGCc -5'
24054 5' -56.7 NC_005262.1 + 28210 0.67 0.713099
Target:  5'- gGGCAcCGACGAcaUCGacGGcgaugaCGCGAUGGa -3'
miRNA:   3'- gCCGU-GCUGCU--AGCa-CCa-----GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 58484 0.67 0.713099
Target:  5'- aCGGCACGAUccAUC-UGGUaGCGGCGa -3'
miRNA:   3'- -GCCGUGCUGc-UAGcACCAgCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 60613 0.67 0.702826
Target:  5'- gGGCACGGCGAaCGccaugcgcacgcUGGcgaGCGGCGa -3'
miRNA:   3'- gCCGUGCUGCUaGC------------ACCag-CGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 41484 0.67 0.702826
Target:  5'- cCGGCGcCGACGAUgaaGcGGUCGCGuaGGu -3'
miRNA:   3'- -GCCGU-GCUGCUAg--CaCCAGCGCugCC- -5'
24054 5' -56.7 NC_005262.1 + 10917 0.67 0.696632
Target:  5'- uGaGCGCGGCGGacgcgcaugcgcuggUCGUGaucGUCGCGGCa- -3'
miRNA:   3'- gC-CGUGCUGCU---------------AGCAC---CAGCGCUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.