Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24054 | 5' | -56.7 | NC_005262.1 | + | 59095 | 0.7 | 0.486151 |
Target: 5'- gCGGCuugcaGACGGUCGaag-CGCGACGGc -3' miRNA: 3'- -GCCGug---CUGCUAGCaccaGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 20199 | 0.7 | 0.495976 |
Target: 5'- gGGCAUGACGugaacaaagaaAUCaaGGUCGaCGGCGGc -3' miRNA: 3'- gCCGUGCUGC-----------UAGcaCCAGC-GCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 24291 | 0.7 | 0.515886 |
Target: 5'- uCGGCGCGACGcUCGccGcccugaugcuucUCGCGAUGGu -3' miRNA: 3'- -GCCGUGCUGCuAGCacC------------AGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 46735 | 0.7 | 0.509877 |
Target: 5'- cCGGCACGACcgGAUCGaucgccgccacgccGGUCGUacaGGCGGc -3' miRNA: 3'- -GCCGUGCUG--CUAGCa-------------CCAGCG---CUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 57461 | 0.7 | 0.525961 |
Target: 5'- gCGGCgGCGACGAUgGaGGUCGagGGCGa -3' miRNA: 3'- -GCCG-UGCUGCUAgCaCCAGCg-CUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 36103 | 0.7 | 0.505889 |
Target: 5'- gCGGCACGAUGAUgCGacGGcacUCGCG-CGGc -3' miRNA: 3'- -GCCGUGCUGCUA-GCa-CC---AGCGCuGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 5601 | 0.7 | 0.495976 |
Target: 5'- gGGCgACGACGAUCccgGUccGGUCGUcGCGGc -3' miRNA: 3'- gCCG-UGCUGCUAG---CA--CCAGCGcUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 31732 | 0.7 | 0.52495 |
Target: 5'- uCGGC-CGGCGGUCGcauGUCGCGcaagcgcACGGu -3' miRNA: 3'- -GCCGuGCUGCUAGCac-CAGCGC-------UGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 60408 | 0.69 | 0.566937 |
Target: 5'- gCGGCAUGGCGcaCGUGGUCGaGAUc- -3' miRNA: 3'- -GCCGUGCUGCuaGCACCAGCgCUGcc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 647 | 0.69 | 0.546326 |
Target: 5'- gCGGUugGGCGAgc--GGUCGCGcACGa -3' miRNA: 3'- -GCCGugCUGCUagcaCCAGCGC-UGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 51657 | 0.69 | 0.553515 |
Target: 5'- gCGGCGCGcucaagcuccgcgcGCGAccaCGUGGUaCGCGAgcCGGu -3' miRNA: 3'- -GCCGUGC--------------UGCUa--GCACCA-GCGCU--GCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 56308 | 0.69 | 0.58774 |
Target: 5'- gCGGCuucgacaugaagGCGugGAUCGaaaagcgucUGGUCGagGGCGGc -3' miRNA: 3'- -GCCG------------UGCugCUAGC---------ACCAGCg-CUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 42162 | 0.69 | 0.58774 |
Target: 5'- cCGGuCGCGGcCGAUCGUcuGUaCGUGAUGGg -3' miRNA: 3'- -GCC-GUGCU-GCUAGCAc-CA-GCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 32977 | 0.69 | 0.566937 |
Target: 5'- uCGGCGUGAaGAUCacGGUCGCGGCGc -3' miRNA: 3'- -GCCGUGCUgCUAGcaCCAGCGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 40352 | 0.69 | 0.546326 |
Target: 5'- cCGGCGCGcugauguCGAUCGUcGGcgaCGuCGACGGc -3' miRNA: 3'- -GCCGUGCu------GCUAGCA-CCa--GC-GCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 5158 | 0.69 | 0.546326 |
Target: 5'- uCGGCGCGcUGAUCGgugacggccgGcGUCGCGggcGCGGg -3' miRNA: 3'- -GCCGUGCuGCUAGCa---------C-CAGCGC---UGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 1513 | 0.69 | 0.556604 |
Target: 5'- uGcGCuCGACGAagCGgccgcGGUCGUGGCGGa -3' miRNA: 3'- gC-CGuGCUGCUa-GCa----CCAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 10649 | 0.69 | 0.556604 |
Target: 5'- gCGGUACGcugcggcuGCGcgCGgccGGUCGCGuCGGc -3' miRNA: 3'- -GCCGUGC--------UGCuaGCa--CCAGCGCuGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 33917 | 0.68 | 0.640205 |
Target: 5'- uCGGUAgCGGCGGUgcCGaGcUCGCGGCGGg -3' miRNA: 3'- -GCCGU-GCUGCUA--GCaCcAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 10978 | 0.68 | 0.650712 |
Target: 5'- uCGGCGCGcCGGgaaCGccGGUCGCGcucgcACGGc -3' miRNA: 3'- -GCCGUGCuGCUa--GCa-CCAGCGC-----UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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