miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 48118 0.68 0.640205
Target:  5'- gGGCGCGGCcggcugcugcguGGUCuggguguUGGUCGCGGgGGu -3'
miRNA:   3'- gCCGUGCUG------------CUAGc------ACCAGCGCUgCC- -5'
24054 5' -56.7 NC_005262.1 + 33461 0.68 0.629691
Target:  5'- gCGGCGuCGACGAUCacGG-C-CGGCGGg -3'
miRNA:   3'- -GCCGU-GCUGCUAGcaCCaGcGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 19409 0.68 0.640205
Target:  5'- aGGCugGAUGAaUGUGcccccgcaGUCGCGGCa- -3'
miRNA:   3'- gCCGugCUGCUaGCAC--------CAGCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 12935 0.68 0.629691
Target:  5'- gCGGCGCGcUGAagggCGUG--CGCGACGGc -3'
miRNA:   3'- -GCCGUGCuGCUa---GCACcaGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 33917 0.68 0.640205
Target:  5'- uCGGUAgCGGCGGUgcCGaGcUCGCGGCGGg -3'
miRNA:   3'- -GCCGU-GCUGCUA--GCaCcAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 10978 0.68 0.650712
Target:  5'- uCGGCGCGcCGGgaaCGccGGUCGCGcucgcACGGc -3'
miRNA:   3'- -GCCGUGCuGCUa--GCa-CCAGCGC-----UGCC- -5'
24054 5' -56.7 NC_005262.1 + 60119 0.68 0.61918
Target:  5'- gGGCACGAgGG-CGccaGcGUCGCGGCGa -3'
miRNA:   3'- gCCGUGCUgCUaGCa--C-CAGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 48466 0.68 0.598196
Target:  5'- -cGCGCGgaucGCGAgccgCGUGGgcacgggcggCGCGACGGc -3'
miRNA:   3'- gcCGUGC----UGCUa---GCACCa---------GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 61132 0.68 0.640205
Target:  5'- aCGGUguACGACGcgC-UGGcgcagcagaUCGCGGCGGc -3'
miRNA:   3'- -GCCG--UGCUGCuaGcACC---------AGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 23375 0.68 0.629691
Target:  5'- uGGCgaACGACGGggcgggCGUGaagaaGCGACGGg -3'
miRNA:   3'- gCCG--UGCUGCUa-----GCACcag--CGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 31315 0.67 0.661203
Target:  5'- gGGCGCGuCGAUCGacaGGcgCGCGAUc- -3'
miRNA:   3'- gCCGUGCuGCUAGCa--CCa-GCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 50352 0.67 0.671669
Target:  5'- cCGGCGCgGGCGcgCccucGUUGCGGCGGu -3'
miRNA:   3'- -GCCGUG-CUGCuaGcac-CAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 50453 0.67 0.671669
Target:  5'- aCGGU-CGACGAaugcgccgcUCGcGGUCGUcGCGGg -3'
miRNA:   3'- -GCCGuGCUGCU---------AGCaCCAGCGcUGCC- -5'
24054 5' -56.7 NC_005262.1 + 17539 0.67 0.671669
Target:  5'- gGGCACG-CGGUCGcgcgcgaggcGGcagcCGCGGCGGc -3'
miRNA:   3'- gCCGUGCuGCUAGCa---------CCa---GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 48965 0.67 0.682102
Target:  5'- cCGGuCACGACG-UCGgacaGUUGCG-CGGg -3'
miRNA:   3'- -GCC-GUGCUGCuAGCac--CAGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 10917 0.67 0.696632
Target:  5'- uGaGCGCGGCGGacgcgcaugcgcuggUCGUGaucGUCGCGGCa- -3'
miRNA:   3'- gC-CGUGCUGCU---------------AGCAC---CAGCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 41484 0.67 0.702826
Target:  5'- cCGGCGcCGACGAUgaaGcGGUCGCGuaGGu -3'
miRNA:   3'- -GCCGU-GCUGCUAg--CaCCAGCGCugCC- -5'
24054 5' -56.7 NC_005262.1 + 53208 0.67 0.713099
Target:  5'- gCGGCAUcGCGGuuuUCGUGaaGUCGcCGACGa -3'
miRNA:   3'- -GCCGUGcUGCU---AGCAC--CAGC-GCUGCc -5'
24054 5' -56.7 NC_005262.1 + 52034 0.67 0.670624
Target:  5'- aCGGCAUGACGAUCGccGG-CGCcuacaucGAgucCGGg -3'
miRNA:   3'- -GCCGUGCUGCUAGCa-CCaGCG-------CU---GCC- -5'
24054 5' -56.7 NC_005262.1 + 12525 0.67 0.670624
Target:  5'- -cGCGCGACGcgaucgccuccauGUUGcggcggcaGGUCGCGGCGGc -3'
miRNA:   3'- gcCGUGCUGC-------------UAGCa-------CCAGCGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.