Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24054 | 5' | -56.7 | NC_005262.1 | + | 17539 | 0.67 | 0.671669 |
Target: 5'- gGGCACG-CGGUCGcgcgcgaggcGGcagcCGCGGCGGc -3' miRNA: 3'- gCCGUGCuGCUAGCa---------CCa---GCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 12525 | 0.67 | 0.670624 |
Target: 5'- -cGCGCGACGcgaucgccuccauGUUGcggcggcaGGUCGCGGCGGc -3' miRNA: 3'- gcCGUGCUGC-------------UAGCa-------CCAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 52034 | 0.67 | 0.670624 |
Target: 5'- aCGGCAUGACGAUCGccGG-CGCcuacaucGAgucCGGg -3' miRNA: 3'- -GCCGUGCUGCUAGCa-CCaGCG-------CU---GCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 55038 | 0.67 | 0.661203 |
Target: 5'- gGGCAaGACGuucaCGaUGaUCGCGACGGg -3' miRNA: 3'- gCCGUgCUGCua--GC-ACcAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 14212 | 0.67 | 0.661203 |
Target: 5'- gCGGCACuGACGG-CG-GG-CGCGAUGu -3' miRNA: 3'- -GCCGUG-CUGCUaGCaCCaGCGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 7452 | 0.67 | 0.713099 |
Target: 5'- aCGGCcCGACcGUCGUGGcgacgccuaagCGCGGCu- -3' miRNA: 3'- -GCCGuGCUGcUAGCACCa----------GCGCUGcc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 48965 | 0.67 | 0.682102 |
Target: 5'- cCGGuCACGACG-UCGgacaGUUGCG-CGGg -3' miRNA: 3'- -GCC-GUGCUGCuAGCac--CAGCGCuGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 10917 | 0.67 | 0.696632 |
Target: 5'- uGaGCGCGGCGGacgcgcaugcgcuggUCGUGaucGUCGCGGCa- -3' miRNA: 3'- gC-CGUGCUGCU---------------AGCAC---CAGCGCUGcc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 53208 | 0.67 | 0.713099 |
Target: 5'- gCGGCAUcGCGGuuuUCGUGaaGUCGcCGACGa -3' miRNA: 3'- -GCCGUGcUGCU---AGCAC--CAGC-GCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 12210 | 0.67 | 0.713099 |
Target: 5'- -aGCGCGGCGAUC-UGcUCGCGcgcACGGc -3' miRNA: 3'- gcCGUGCUGCUAGcACcAGCGC---UGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 23706 | 0.66 | 0.753364 |
Target: 5'- cCGGCGC-ACGGUCGaccaCGCGGCGa -3' miRNA: 3'- -GCCGUGcUGCUAGCaccaGCGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 48051 | 0.66 | 0.743442 |
Target: 5'- aGGCGCGAgaGGUCGU--UCGCGccuuCGGu -3' miRNA: 3'- gCCGUGCUg-CUAGCAccAGCGCu---GCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 41287 | 0.66 | 0.753364 |
Target: 5'- aCGGUGCucgaaGCGGUCGccgGGcgcgcacgcgaUCGCGGCGGu -3' miRNA: 3'- -GCCGUGc----UGCUAGCa--CC-----------AGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 28815 | 0.66 | 0.733417 |
Target: 5'- aCGGCGuccgGGCGcgCGgccUCGCGGCGGa -3' miRNA: 3'- -GCCGUg---CUGCuaGCaccAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 4829 | 0.66 | 0.7233 |
Target: 5'- cCGGCGCGACGcagugccuuUCcgGUGGauucgcuugUCGCGGCGc -3' miRNA: 3'- -GCCGUGCUGCu--------AG--CACC---------AGCGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 5044 | 0.66 | 0.733417 |
Target: 5'- cCGGC-CGGCgccuGAUCGgcgGGcaggccCGCGGCGGc -3' miRNA: 3'- -GCCGuGCUG----CUAGCa--CCa-----GCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 55641 | 0.66 | 0.743442 |
Target: 5'- gGGcCGCG-CGcUCGUGGcCGCGucCGGc -3' miRNA: 3'- gCC-GUGCuGCuAGCACCaGCGCu-GCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 49896 | 0.66 | 0.743442 |
Target: 5'- -cGCGCGGcCGAUCG-GGcCG-GACGGu -3' miRNA: 3'- gcCGUGCU-GCUAGCaCCaGCgCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 55165 | 0.66 | 0.763174 |
Target: 5'- cCGGcCGCGAacAUCaUGGUCGCgGACGa -3' miRNA: 3'- -GCC-GUGCUgcUAGcACCAGCG-CUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 29757 | 0.66 | 0.763174 |
Target: 5'- gGGUugGGCGGgcugCGcGGgCGCgGGCGGc -3' miRNA: 3'- gCCGugCUGCUa---GCaCCaGCG-CUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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