miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 42754 1.11 0.000878
Target:  5'- aCGGCACGACGAUCGUGGUCGCGACGGa -3'
miRNA:   3'- -GCCGUGCUGCUAGCACCAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 46662 0.82 0.093456
Target:  5'- aCGGCGCuGGCG-UCGUGGUCGuCGugGGc -3'
miRNA:   3'- -GCCGUG-CUGCuAGCACCAGC-GCugCC- -5'
24054 5' -56.7 NC_005262.1 + 30202 0.79 0.15136
Target:  5'- gCGGCACGA---UCGUGGgcuUCGCGGCGGc -3'
miRNA:   3'- -GCCGUGCUgcuAGCACC---AGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 46830 0.77 0.196209
Target:  5'- cCGGCgugGCGGCGAUCGauccGGUCGUGcCGGa -3'
miRNA:   3'- -GCCG---UGCUGCUAGCa---CCAGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 5317 0.75 0.267514
Target:  5'- gCGGCgucgacgccACGGCGAUCGUgcaggauacgcccucGGUCGCGcCGGc -3'
miRNA:   3'- -GCCG---------UGCUGCUAGCA---------------CCAGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 50520 0.75 0.271448
Target:  5'- gCGGCACGACGA-CGUGcaCGCGGCc- -3'
miRNA:   3'- -GCCGUGCUGCUaGCACcaGCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 33879 0.75 0.278107
Target:  5'- cCGcGCGCGAgaCGAUCGUGcGUCGgcCGGCGGc -3'
miRNA:   3'- -GC-CGUGCU--GCUAGCAC-CAGC--GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 40745 0.75 0.284895
Target:  5'- -uGCGCGugGGUCG-GGUCGCuGACGc -3'
miRNA:   3'- gcCGUGCugCUAGCaCCAGCG-CUGCc -5'
24054 5' -56.7 NC_005262.1 + 11533 0.74 0.298863
Target:  5'- aGGCACGAUGcgCG-GG-CGCGGCGu -3'
miRNA:   3'- gCCGUGCUGCuaGCaCCaGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 46542 0.73 0.367383
Target:  5'- cCGGCGCGGCauUCG-GGUCcggcgcgggcggcGCGGCGGg -3'
miRNA:   3'- -GCCGUGCUGcuAGCaCCAG-------------CGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 32155 0.72 0.385049
Target:  5'- gCGGCACGugGAUCGacuuccagaaGG-CGgCGGCGGc -3'
miRNA:   3'- -GCCGUGCugCUAGCa---------CCaGC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 44154 0.72 0.393657
Target:  5'- aCGcGCGCG-CGAUCGggcaGGagCGCGGCGGc -3'
miRNA:   3'- -GC-CGUGCuGCUAGCa---CCa-GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 62766 0.72 0.402389
Target:  5'- uCGGCACGugGGUCGccagcgagGGauUCGCGccgaaaGCGGa -3'
miRNA:   3'- -GCCGUGCugCUAGCa-------CC--AGCGC------UGCC- -5'
24054 5' -56.7 NC_005262.1 + 27383 0.72 0.402389
Target:  5'- uCGGCGCcuccGCGAaCGUGGacuUCGgCGACGGg -3'
miRNA:   3'- -GCCGUGc---UGCUaGCACC---AGC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 25638 0.72 0.405916
Target:  5'- aGGCG-GugGAUCGUGccgccgcgcacggacGUCGCGACGcGg -3'
miRNA:   3'- gCCGUgCugCUAGCAC---------------CAGCGCUGC-C- -5'
24054 5' -56.7 NC_005262.1 + 51549 0.71 0.429306
Target:  5'- cCGGCuCG-CGuaccaCGUGGUCGCGcGCGGa -3'
miRNA:   3'- -GCCGuGCuGCua---GCACCAGCGC-UGCC- -5'
24054 5' -56.7 NC_005262.1 + 8898 0.71 0.466787
Target:  5'- -cGCACGACGGUCcgcucuUGGgugCGCGGCGa -3'
miRNA:   3'- gcCGUGCUGCUAGc-----ACCa--GCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 57620 0.71 0.47642
Target:  5'- cCGGUACGACcuGAUCGcGGUcgaugcccggCGCGACGc -3'
miRNA:   3'- -GCCGUGCUG--CUAGCaCCA----------GCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 6588 0.71 0.47642
Target:  5'- uCGGCGCGcUGAUCGUcgagcgGGUUGCGAacuucUGGg -3'
miRNA:   3'- -GCCGUGCuGCUAGCA------CCAGCGCU-----GCC- -5'
24054 5' -56.7 NC_005262.1 + 59095 0.7 0.486151
Target:  5'- gCGGCuugcaGACGGUCGaag-CGCGACGGc -3'
miRNA:   3'- -GCCGug---CUGCUAGCaccaGCGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.