miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 48965 0.67 0.682102
Target:  5'- cCGGuCACGACG-UCGgacaGUUGCG-CGGg -3'
miRNA:   3'- -GCC-GUGCUGCuAGCac--CAGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 11490 0.67 0.671669
Target:  5'- cCGGCGCGGCGcggcuucggCGUGGagcCGCGcGCGa -3'
miRNA:   3'- -GCCGUGCUGCua-------GCACCa--GCGC-UGCc -5'
24054 5' -56.7 NC_005262.1 + 60836 0.67 0.671669
Target:  5'- cCGGCcuACG-CGAUCG-GcGUgGCGAUGGc -3'
miRNA:   3'- -GCCG--UGCuGCUAGCaC-CAgCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 50352 0.67 0.671669
Target:  5'- cCGGCGCgGGCGcgCccucGUUGCGGCGGu -3'
miRNA:   3'- -GCCGUG-CUGCuaGcac-CAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 17539 0.67 0.671669
Target:  5'- gGGCACG-CGGUCGcgcgcgaggcGGcagcCGCGGCGGc -3'
miRNA:   3'- gCCGUGCuGCUAGCa---------CCa---GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 50453 0.67 0.671669
Target:  5'- aCGGU-CGACGAaugcgccgcUCGcGGUCGUcGCGGg -3'
miRNA:   3'- -GCCGuGCUGCU---------AGCaCCAGCGcUGCC- -5'
24054 5' -56.7 NC_005262.1 + 52034 0.67 0.670624
Target:  5'- aCGGCAUGACGAUCGccGG-CGCcuacaucGAgucCGGg -3'
miRNA:   3'- -GCCGUGCUGCUAGCa-CCaGCG-------CU---GCC- -5'
24054 5' -56.7 NC_005262.1 + 12525 0.67 0.670624
Target:  5'- -cGCGCGACGcgaucgccuccauGUUGcggcggcaGGUCGCGGCGGc -3'
miRNA:   3'- gcCGUGCUGC-------------UAGCa-------CCAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 31315 0.67 0.661203
Target:  5'- gGGCGCGuCGAUCGacaGGcgCGCGAUc- -3'
miRNA:   3'- gCCGUGCuGCUAGCa--CCa-GCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 55038 0.67 0.661203
Target:  5'- gGGCAaGACGuucaCGaUGaUCGCGACGGg -3'
miRNA:   3'- gCCGUgCUGCua--GC-ACcAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 14212 0.67 0.661203
Target:  5'- gCGGCACuGACGG-CG-GG-CGCGAUGu -3'
miRNA:   3'- -GCCGUG-CUGCUaGCaCCaGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 10978 0.68 0.650712
Target:  5'- uCGGCGCGcCGGgaaCGccGGUCGCGcucgcACGGc -3'
miRNA:   3'- -GCCGUGCuGCUa--GCa-CCAGCGC-----UGCC- -5'
24054 5' -56.7 NC_005262.1 + 51964 0.68 0.640205
Target:  5'- gCGGCGuCGGCucGGUCGUGcUCGCGucguucGCGGc -3'
miRNA:   3'- -GCCGU-GCUG--CUAGCACcAGCGC------UGCC- -5'
24054 5' -56.7 NC_005262.1 + 48118 0.68 0.640205
Target:  5'- gGGCGCGGCcggcugcugcguGGUCuggguguUGGUCGCGGgGGu -3'
miRNA:   3'- gCCGUGCUG------------CUAGc------ACCAGCGCUgCC- -5'
24054 5' -56.7 NC_005262.1 + 61132 0.68 0.640205
Target:  5'- aCGGUguACGACGcgC-UGGcgcagcagaUCGCGGCGGc -3'
miRNA:   3'- -GCCG--UGCUGCuaGcACC---------AGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 33917 0.68 0.640205
Target:  5'- uCGGUAgCGGCGGUgcCGaGcUCGCGGCGGg -3'
miRNA:   3'- -GCCGU-GCUGCUA--GCaCcAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 19409 0.68 0.640205
Target:  5'- aGGCugGAUGAaUGUGcccccgcaGUCGCGGCa- -3'
miRNA:   3'- gCCGugCUGCUaGCAC--------CAGCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 33461 0.68 0.629691
Target:  5'- gCGGCGuCGACGAUCacGG-C-CGGCGGg -3'
miRNA:   3'- -GCCGU-GCUGCUAGcaCCaGcGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 10506 0.68 0.629691
Target:  5'- gCGGUcaGCGACGAUCucGGUCGUGuaACGa -3'
miRNA:   3'- -GCCG--UGCUGCUAGcaCCAGCGC--UGCc -5'
24054 5' -56.7 NC_005262.1 + 12935 0.68 0.629691
Target:  5'- gCGGCGCGcUGAagggCGUG--CGCGACGGc -3'
miRNA:   3'- -GCCGUGCuGCUa---GCACcaGCGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.