miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 647 0.69 0.546326
Target:  5'- gCGGUugGGCGAgc--GGUCGCGcACGa -3'
miRNA:   3'- -GCCGugCUGCUagcaCCAGCGC-UGCc -5'
24054 5' -56.7 NC_005262.1 + 1513 0.69 0.556604
Target:  5'- uGcGCuCGACGAagCGgccgcGGUCGUGGCGGa -3'
miRNA:   3'- gC-CGuGCUGCUa-GCa----CCAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 4829 0.66 0.7233
Target:  5'- cCGGCGCGACGcagugccuuUCcgGUGGauucgcuugUCGCGGCGc -3'
miRNA:   3'- -GCCGUGCUGCu--------AG--CACC---------AGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 5044 0.66 0.733417
Target:  5'- cCGGC-CGGCgccuGAUCGgcgGGcaggccCGCGGCGGc -3'
miRNA:   3'- -GCCGuGCUG----CUAGCa--CCa-----GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 5158 0.69 0.546326
Target:  5'- uCGGCGCGcUGAUCGgugacggccgGcGUCGCGggcGCGGg -3'
miRNA:   3'- -GCCGUGCuGCUAGCa---------C-CAGCGC---UGCC- -5'
24054 5' -56.7 NC_005262.1 + 5317 0.75 0.267514
Target:  5'- gCGGCgucgacgccACGGCGAUCGUgcaggauacgcccucGGUCGCGcCGGc -3'
miRNA:   3'- -GCCG---------UGCUGCUAGCA---------------CCAGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 5601 0.7 0.495976
Target:  5'- gGGCgACGACGAUCccgGUccGGUCGUcGCGGc -3'
miRNA:   3'- gCCG-UGCUGCUAG---CA--CCAGCGcUGCC- -5'
24054 5' -56.7 NC_005262.1 + 6588 0.71 0.47642
Target:  5'- uCGGCGCGcUGAUCGUcgagcgGGUUGCGAacuucUGGg -3'
miRNA:   3'- -GCCGUGCuGCUAGCA------CCAGCGCU-----GCC- -5'
24054 5' -56.7 NC_005262.1 + 7452 0.67 0.713099
Target:  5'- aCGGCcCGACcGUCGUGGcgacgccuaagCGCGGCu- -3'
miRNA:   3'- -GCCGuGCUGcUAGCACCa----------GCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 8898 0.71 0.466787
Target:  5'- -cGCACGACGGUCcgcucuUGGgugCGCGGCGa -3'
miRNA:   3'- gcCGUGCUGCUAGc-----ACCa--GCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 10506 0.68 0.629691
Target:  5'- gCGGUcaGCGACGAUCucGGUCGUGuaACGa -3'
miRNA:   3'- -GCCG--UGCUGCUAGcaCCAGCGC--UGCc -5'
24054 5' -56.7 NC_005262.1 + 10649 0.69 0.556604
Target:  5'- gCGGUACGcugcggcuGCGcgCGgccGGUCGCGuCGGc -3'
miRNA:   3'- -GCCGUGC--------UGCuaGCa--CCAGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 10917 0.67 0.696632
Target:  5'- uGaGCGCGGCGGacgcgcaugcgcuggUCGUGaucGUCGCGGCa- -3'
miRNA:   3'- gC-CGUGCUGCU---------------AGCAC---CAGCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 10978 0.68 0.650712
Target:  5'- uCGGCGCGcCGGgaaCGccGGUCGCGcucgcACGGc -3'
miRNA:   3'- -GCCGUGCuGCUa--GCa-CCAGCGC-----UGCC- -5'
24054 5' -56.7 NC_005262.1 + 11490 0.67 0.671669
Target:  5'- cCGGCGCGGCGcggcuucggCGUGGagcCGCGcGCGa -3'
miRNA:   3'- -GCCGUGCUGCua-------GCACCa--GCGC-UGCc -5'
24054 5' -56.7 NC_005262.1 + 11533 0.74 0.298863
Target:  5'- aGGCACGAUGcgCG-GG-CGCGGCGu -3'
miRNA:   3'- gCCGUGCUGCuaGCaCCaGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 12017 0.67 0.713099
Target:  5'- -uGCACGGCGcaAUC-UGGUCGCGcGCGu -3'
miRNA:   3'- gcCGUGCUGC--UAGcACCAGCGC-UGCc -5'
24054 5' -56.7 NC_005262.1 + 12210 0.67 0.713099
Target:  5'- -aGCGCGGCGAUC-UGcUCGCGcgcACGGc -3'
miRNA:   3'- gcCGUGCUGCUAGcACcAGCGC---UGCC- -5'
24054 5' -56.7 NC_005262.1 + 12318 0.7 0.525961
Target:  5'- aCGGCAUG-CGGcUCGUGccgcagcgCGCGGCGGc -3'
miRNA:   3'- -GCCGUGCuGCU-AGCACca------GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 12525 0.67 0.670624
Target:  5'- -cGCGCGACGcgaucgccuccauGUUGcggcggcaGGUCGCGGCGGc -3'
miRNA:   3'- gcCGUGCUGC-------------UAGCa-------CCAGCGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.