miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 33917 0.68 0.640205
Target:  5'- uCGGUAgCGGCGGUgcCGaGcUCGCGGCGGg -3'
miRNA:   3'- -GCCGU-GCUGCUA--GCaCcAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 36103 0.7 0.505889
Target:  5'- gCGGCACGAUGAUgCGacGGcacUCGCG-CGGc -3'
miRNA:   3'- -GCCGUGCUGCUA-GCa-CC---AGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 40352 0.69 0.546326
Target:  5'- cCGGCGCGcugauguCGAUCGUcGGcgaCGuCGACGGc -3'
miRNA:   3'- -GCCGUGCu------GCUAGCA-CCa--GC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 40745 0.75 0.284895
Target:  5'- -uGCGCGugGGUCG-GGUCGCuGACGc -3'
miRNA:   3'- gcCGUGCugCUAGCaCCAGCG-CUGCc -5'
24054 5' -56.7 NC_005262.1 + 41287 0.66 0.753364
Target:  5'- aCGGUGCucgaaGCGGUCGccgGGcgcgcacgcgaUCGCGGCGGu -3'
miRNA:   3'- -GCCGUGc----UGCUAGCa--CC-----------AGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 41484 0.67 0.702826
Target:  5'- cCGGCGcCGACGAUgaaGcGGUCGCGuaGGu -3'
miRNA:   3'- -GCCGU-GCUGCUAg--CaCCAGCGCugCC- -5'
24054 5' -56.7 NC_005262.1 + 42162 0.69 0.58774
Target:  5'- cCGGuCGCGGcCGAUCGUcuGUaCGUGAUGGg -3'
miRNA:   3'- -GCC-GUGCU-GCUAGCAc-CA-GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 42754 1.11 0.000878
Target:  5'- aCGGCACGACGAUCGUGGUCGCGACGGa -3'
miRNA:   3'- -GCCGUGCUGCUAGCACCAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 44154 0.72 0.393657
Target:  5'- aCGcGCGCG-CGAUCGggcaGGagCGCGGCGGc -3'
miRNA:   3'- -GC-CGUGCuGCUAGCa---CCa-GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 46542 0.73 0.367383
Target:  5'- cCGGCGCGGCauUCG-GGUCcggcgcgggcggcGCGGCGGg -3'
miRNA:   3'- -GCCGUGCUGcuAGCaCCAG-------------CGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 46662 0.82 0.093456
Target:  5'- aCGGCGCuGGCG-UCGUGGUCGuCGugGGc -3'
miRNA:   3'- -GCCGUG-CUGCuAGCACCAGC-GCugCC- -5'
24054 5' -56.7 NC_005262.1 + 46735 0.7 0.509877
Target:  5'- cCGGCACGACcgGAUCGaucgccgccacgccGGUCGUacaGGCGGc -3'
miRNA:   3'- -GCCGUGCUG--CUAGCa-------------CCAGCG---CUGCC- -5'
24054 5' -56.7 NC_005262.1 + 46830 0.77 0.196209
Target:  5'- cCGGCgugGCGGCGAUCGauccGGUCGUGcCGGa -3'
miRNA:   3'- -GCCG---UGCUGCUAGCa---CCAGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 48051 0.66 0.743442
Target:  5'- aGGCGCGAgaGGUCGU--UCGCGccuuCGGu -3'
miRNA:   3'- gCCGUGCUg-CUAGCAccAGCGCu---GCC- -5'
24054 5' -56.7 NC_005262.1 + 48118 0.68 0.640205
Target:  5'- gGGCGCGGCcggcugcugcguGGUCuggguguUGGUCGCGGgGGu -3'
miRNA:   3'- gCCGUGCUG------------CUAGc------ACCAGCGCUgCC- -5'
24054 5' -56.7 NC_005262.1 + 48466 0.68 0.598196
Target:  5'- -cGCGCGgaucGCGAgccgCGUGGgcacgggcggCGCGACGGc -3'
miRNA:   3'- gcCGUGC----UGCUa---GCACCa---------GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 48965 0.67 0.682102
Target:  5'- cCGGuCACGACG-UCGgacaGUUGCG-CGGg -3'
miRNA:   3'- -GCC-GUGCUGCuAGCac--CAGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 49896 0.66 0.743442
Target:  5'- -cGCGCGGcCGAUCG-GGcCG-GACGGu -3'
miRNA:   3'- gcCGUGCU-GCUAGCaCCaGCgCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 50352 0.67 0.671669
Target:  5'- cCGGCGCgGGCGcgCccucGUUGCGGCGGu -3'
miRNA:   3'- -GCCGUG-CUGCuaGcac-CAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 50453 0.67 0.671669
Target:  5'- aCGGU-CGACGAaugcgccgcUCGcGGUCGUcGCGGg -3'
miRNA:   3'- -GCCGuGCUGCU---------AGCaCCAGCGcUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.