miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 50520 0.75 0.271448
Target:  5'- gCGGCACGACGA-CGUGcaCGCGGCc- -3'
miRNA:   3'- -GCCGUGCUGCUaGCACcaGCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 51549 0.71 0.429306
Target:  5'- cCGGCuCG-CGuaccaCGUGGUCGCGcGCGGa -3'
miRNA:   3'- -GCCGuGCuGCua---GCACCAGCGC-UGCC- -5'
24054 5' -56.7 NC_005262.1 + 51657 0.69 0.553515
Target:  5'- gCGGCGCGcucaagcuccgcgcGCGAccaCGUGGUaCGCGAgcCGGu -3'
miRNA:   3'- -GCCGUGC--------------UGCUa--GCACCA-GCGCU--GCC- -5'
24054 5' -56.7 NC_005262.1 + 51964 0.68 0.640205
Target:  5'- gCGGCGuCGGCucGGUCGUGcUCGCGucguucGCGGc -3'
miRNA:   3'- -GCCGU-GCUG--CUAGCACcAGCGC------UGCC- -5'
24054 5' -56.7 NC_005262.1 + 52034 0.67 0.670624
Target:  5'- aCGGCAUGACGAUCGccGG-CGCcuacaucGAgucCGGg -3'
miRNA:   3'- -GCCGUGCUGCUAGCa-CCaGCG-------CU---GCC- -5'
24054 5' -56.7 NC_005262.1 + 53208 0.67 0.713099
Target:  5'- gCGGCAUcGCGGuuuUCGUGaaGUCGcCGACGa -3'
miRNA:   3'- -GCCGUGcUGCU---AGCAC--CAGC-GCUGCc -5'
24054 5' -56.7 NC_005262.1 + 55038 0.67 0.661203
Target:  5'- gGGCAaGACGuucaCGaUGaUCGCGACGGg -3'
miRNA:   3'- gCCGUgCUGCua--GC-ACcAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 55165 0.66 0.763174
Target:  5'- cCGGcCGCGAacAUCaUGGUCGCgGACGa -3'
miRNA:   3'- -GCC-GUGCUgcUAGcACCAGCG-CUGCc -5'
24054 5' -56.7 NC_005262.1 + 55641 0.66 0.743442
Target:  5'- gGGcCGCG-CGcUCGUGGcCGCGucCGGc -3'
miRNA:   3'- gCC-GUGCuGCuAGCACCaGCGCu-GCC- -5'
24054 5' -56.7 NC_005262.1 + 56308 0.69 0.58774
Target:  5'- gCGGCuucgacaugaagGCGugGAUCGaaaagcgucUGGUCGagGGCGGc -3'
miRNA:   3'- -GCCG------------UGCugCUAGC---------ACCAGCg-CUGCC- -5'
24054 5' -56.7 NC_005262.1 + 57461 0.7 0.525961
Target:  5'- gCGGCgGCGACGAUgGaGGUCGagGGCGa -3'
miRNA:   3'- -GCCG-UGCUGCUAgCaCCAGCg-CUGCc -5'
24054 5' -56.7 NC_005262.1 + 57620 0.71 0.47642
Target:  5'- cCGGUACGACcuGAUCGcGGUcgaugcccggCGCGACGc -3'
miRNA:   3'- -GCCGUGCUG--CUAGCaCCA----------GCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 58484 0.67 0.713099
Target:  5'- aCGGCACGAUccAUC-UGGUaGCGGCGa -3'
miRNA:   3'- -GCCGUGCUGc-UAGcACCAgCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 59095 0.7 0.486151
Target:  5'- gCGGCuugcaGACGGUCGaag-CGCGACGGc -3'
miRNA:   3'- -GCCGug---CUGCUAGCaccaGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 59590 0.66 0.743442
Target:  5'- uCGcGCGCGAcuaCGAUcaggcCGUGGUCGUGgGCGa -3'
miRNA:   3'- -GC-CGUGCU---GCUA-----GCACCAGCGC-UGCc -5'
24054 5' -56.7 NC_005262.1 + 60119 0.68 0.61918
Target:  5'- gGGCACGAgGG-CGccaGcGUCGCGGCGa -3'
miRNA:   3'- gCCGUGCUgCUaGCa--C-CAGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 60408 0.69 0.566937
Target:  5'- gCGGCAUGGCGcaCGUGGUCGaGAUc- -3'
miRNA:   3'- -GCCGUGCUGCuaGCACCAGCgCUGcc -5'
24054 5' -56.7 NC_005262.1 + 60613 0.67 0.702826
Target:  5'- gGGCACGGCGAaCGccaugcgcacgcUGGcgaGCGGCGa -3'
miRNA:   3'- gCCGUGCUGCUaGC------------ACCag-CGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 60836 0.67 0.671669
Target:  5'- cCGGCcuACG-CGAUCG-GcGUgGCGAUGGc -3'
miRNA:   3'- -GCCG--UGCuGCUAGCaC-CAgCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 61132 0.68 0.640205
Target:  5'- aCGGUguACGACGcgC-UGGcgcagcagaUCGCGGCGGc -3'
miRNA:   3'- -GCCG--UGCUGCuaGcACC---------AGCGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.