Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24054 | 5' | -56.7 | NC_005262.1 | + | 50520 | 0.75 | 0.271448 |
Target: 5'- gCGGCACGACGA-CGUGcaCGCGGCc- -3' miRNA: 3'- -GCCGUGCUGCUaGCACcaGCGCUGcc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 50453 | 0.67 | 0.671669 |
Target: 5'- aCGGU-CGACGAaugcgccgcUCGcGGUCGUcGCGGg -3' miRNA: 3'- -GCCGuGCUGCU---------AGCaCCAGCGcUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 50352 | 0.67 | 0.671669 |
Target: 5'- cCGGCGCgGGCGcgCccucGUUGCGGCGGu -3' miRNA: 3'- -GCCGUG-CUGCuaGcac-CAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 49896 | 0.66 | 0.743442 |
Target: 5'- -cGCGCGGcCGAUCG-GGcCG-GACGGu -3' miRNA: 3'- gcCGUGCU-GCUAGCaCCaGCgCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 48965 | 0.67 | 0.682102 |
Target: 5'- cCGGuCACGACG-UCGgacaGUUGCG-CGGg -3' miRNA: 3'- -GCC-GUGCUGCuAGCac--CAGCGCuGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 48466 | 0.68 | 0.598196 |
Target: 5'- -cGCGCGgaucGCGAgccgCGUGGgcacgggcggCGCGACGGc -3' miRNA: 3'- gcCGUGC----UGCUa---GCACCa---------GCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 48118 | 0.68 | 0.640205 |
Target: 5'- gGGCGCGGCcggcugcugcguGGUCuggguguUGGUCGCGGgGGu -3' miRNA: 3'- gCCGUGCUG------------CUAGc------ACCAGCGCUgCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 48051 | 0.66 | 0.743442 |
Target: 5'- aGGCGCGAgaGGUCGU--UCGCGccuuCGGu -3' miRNA: 3'- gCCGUGCUg-CUAGCAccAGCGCu---GCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 46830 | 0.77 | 0.196209 |
Target: 5'- cCGGCgugGCGGCGAUCGauccGGUCGUGcCGGa -3' miRNA: 3'- -GCCG---UGCUGCUAGCa---CCAGCGCuGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 46735 | 0.7 | 0.509877 |
Target: 5'- cCGGCACGACcgGAUCGaucgccgccacgccGGUCGUacaGGCGGc -3' miRNA: 3'- -GCCGUGCUG--CUAGCa-------------CCAGCG---CUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 46662 | 0.82 | 0.093456 |
Target: 5'- aCGGCGCuGGCG-UCGUGGUCGuCGugGGc -3' miRNA: 3'- -GCCGUG-CUGCuAGCACCAGC-GCugCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 46542 | 0.73 | 0.367383 |
Target: 5'- cCGGCGCGGCauUCG-GGUCcggcgcgggcggcGCGGCGGg -3' miRNA: 3'- -GCCGUGCUGcuAGCaCCAG-------------CGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 44154 | 0.72 | 0.393657 |
Target: 5'- aCGcGCGCG-CGAUCGggcaGGagCGCGGCGGc -3' miRNA: 3'- -GC-CGUGCuGCUAGCa---CCa-GCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 42754 | 1.11 | 0.000878 |
Target: 5'- aCGGCACGACGAUCGUGGUCGCGACGGa -3' miRNA: 3'- -GCCGUGCUGCUAGCACCAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 42162 | 0.69 | 0.58774 |
Target: 5'- cCGGuCGCGGcCGAUCGUcuGUaCGUGAUGGg -3' miRNA: 3'- -GCC-GUGCU-GCUAGCAc-CA-GCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 41484 | 0.67 | 0.702826 |
Target: 5'- cCGGCGcCGACGAUgaaGcGGUCGCGuaGGu -3' miRNA: 3'- -GCCGU-GCUGCUAg--CaCCAGCGCugCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 41287 | 0.66 | 0.753364 |
Target: 5'- aCGGUGCucgaaGCGGUCGccgGGcgcgcacgcgaUCGCGGCGGu -3' miRNA: 3'- -GCCGUGc----UGCUAGCa--CC-----------AGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 40745 | 0.75 | 0.284895 |
Target: 5'- -uGCGCGugGGUCG-GGUCGCuGACGc -3' miRNA: 3'- gcCGUGCugCUAGCaCCAGCG-CUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 40352 | 0.69 | 0.546326 |
Target: 5'- cCGGCGCGcugauguCGAUCGUcGGcgaCGuCGACGGc -3' miRNA: 3'- -GCCGUGCu------GCUAGCA-CCa--GC-GCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 36103 | 0.7 | 0.505889 |
Target: 5'- gCGGCACGAUGAUgCGacGGcacUCGCG-CGGc -3' miRNA: 3'- -GCCGUGCUGCUA-GCa-CC---AGCGCuGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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