miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 33917 0.68 0.640205
Target:  5'- uCGGUAgCGGCGGUgcCGaGcUCGCGGCGGg -3'
miRNA:   3'- -GCCGU-GCUGCUA--GCaCcAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 33879 0.75 0.278107
Target:  5'- cCGcGCGCGAgaCGAUCGUGcGUCGgcCGGCGGc -3'
miRNA:   3'- -GC-CGUGCU--GCUAGCAC-CAGC--GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 33461 0.68 0.629691
Target:  5'- gCGGCGuCGACGAUCacGG-C-CGGCGGg -3'
miRNA:   3'- -GCCGU-GCUGCUAGcaCCaGcGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 32977 0.69 0.566937
Target:  5'- uCGGCGUGAaGAUCacGGUCGCGGCGc -3'
miRNA:   3'- -GCCGUGCUgCUAGcaCCAGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 32155 0.72 0.385049
Target:  5'- gCGGCACGugGAUCGacuuccagaaGG-CGgCGGCGGc -3'
miRNA:   3'- -GCCGUGCugCUAGCa---------CCaGC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 31732 0.7 0.52495
Target:  5'- uCGGC-CGGCGGUCGcauGUCGCGcaagcgcACGGu -3'
miRNA:   3'- -GCCGuGCUGCUAGCac-CAGCGC-------UGCC- -5'
24054 5' -56.7 NC_005262.1 + 31315 0.67 0.661203
Target:  5'- gGGCGCGuCGAUCGacaGGcgCGCGAUc- -3'
miRNA:   3'- gCCGUGCuGCUAGCa--CCa-GCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 30202 0.79 0.15136
Target:  5'- gCGGCACGA---UCGUGGgcuUCGCGGCGGc -3'
miRNA:   3'- -GCCGUGCUgcuAGCACC---AGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 29757 0.66 0.763174
Target:  5'- gGGUugGGCGGgcugCGcGGgCGCgGGCGGc -3'
miRNA:   3'- gCCGugCUGCUa---GCaCCaGCG-CUGCC- -5'
24054 5' -56.7 NC_005262.1 + 28815 0.66 0.733417
Target:  5'- aCGGCGuccgGGCGcgCGgccUCGCGGCGGa -3'
miRNA:   3'- -GCCGUg---CUGCuaGCaccAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 28210 0.67 0.713099
Target:  5'- gGGCAcCGACGAcaUCGacGGcgaugaCGCGAUGGa -3'
miRNA:   3'- gCCGU-GCUGCU--AGCa-CCa-----GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 27383 0.72 0.402389
Target:  5'- uCGGCGCcuccGCGAaCGUGGacuUCGgCGACGGg -3'
miRNA:   3'- -GCCGUGc---UGCUaGCACC---AGC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 25638 0.72 0.405916
Target:  5'- aGGCG-GugGAUCGUGccgccgcgcacggacGUCGCGACGcGg -3'
miRNA:   3'- gCCGUgCugCUAGCAC---------------CAGCGCUGC-C- -5'
24054 5' -56.7 NC_005262.1 + 24291 0.7 0.515886
Target:  5'- uCGGCGCGACGcUCGccGcccugaugcuucUCGCGAUGGu -3'
miRNA:   3'- -GCCGUGCUGCuAGCacC------------AGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 23706 0.66 0.753364
Target:  5'- cCGGCGC-ACGGUCGaccaCGCGGCGa -3'
miRNA:   3'- -GCCGUGcUGCUAGCaccaGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 23375 0.68 0.629691
Target:  5'- uGGCgaACGACGGggcgggCGUGaagaaGCGACGGg -3'
miRNA:   3'- gCCG--UGCUGCUa-----GCACcag--CGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 20199 0.7 0.495976
Target:  5'- gGGCAUGACGugaacaaagaaAUCaaGGUCGaCGGCGGc -3'
miRNA:   3'- gCCGUGCUGC-----------UAGcaCCAGC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 19409 0.68 0.640205
Target:  5'- aGGCugGAUGAaUGUGcccccgcaGUCGCGGCa- -3'
miRNA:   3'- gCCGugCUGCUaGCAC--------CAGCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 17539 0.67 0.671669
Target:  5'- gGGCACG-CGGUCGcgcgcgaggcGGcagcCGCGGCGGc -3'
miRNA:   3'- gCCGUGCuGCUAGCa---------CCa---GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 14212 0.67 0.661203
Target:  5'- gCGGCACuGACGG-CG-GG-CGCGAUGu -3'
miRNA:   3'- -GCCGUG-CUGCUaGCaCCaGCGCUGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.