Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24054 | 5' | -56.7 | NC_005262.1 | + | 12935 | 0.68 | 0.629691 |
Target: 5'- gCGGCGCGcUGAagggCGUG--CGCGACGGc -3' miRNA: 3'- -GCCGUGCuGCUa---GCACcaGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 12525 | 0.67 | 0.670624 |
Target: 5'- -cGCGCGACGcgaucgccuccauGUUGcggcggcaGGUCGCGGCGGc -3' miRNA: 3'- gcCGUGCUGC-------------UAGCa-------CCAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 12318 | 0.7 | 0.525961 |
Target: 5'- aCGGCAUG-CGGcUCGUGccgcagcgCGCGGCGGc -3' miRNA: 3'- -GCCGUGCuGCU-AGCACca------GCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 12210 | 0.67 | 0.713099 |
Target: 5'- -aGCGCGGCGAUC-UGcUCGCGcgcACGGc -3' miRNA: 3'- gcCGUGCUGCUAGcACcAGCGC---UGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 12017 | 0.67 | 0.713099 |
Target: 5'- -uGCACGGCGcaAUC-UGGUCGCGcGCGu -3' miRNA: 3'- gcCGUGCUGC--UAGcACCAGCGC-UGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 11533 | 0.74 | 0.298863 |
Target: 5'- aGGCACGAUGcgCG-GG-CGCGGCGu -3' miRNA: 3'- gCCGUGCUGCuaGCaCCaGCGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 11490 | 0.67 | 0.671669 |
Target: 5'- cCGGCGCGGCGcggcuucggCGUGGagcCGCGcGCGa -3' miRNA: 3'- -GCCGUGCUGCua-------GCACCa--GCGC-UGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 10978 | 0.68 | 0.650712 |
Target: 5'- uCGGCGCGcCGGgaaCGccGGUCGCGcucgcACGGc -3' miRNA: 3'- -GCCGUGCuGCUa--GCa-CCAGCGC-----UGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 10917 | 0.67 | 0.696632 |
Target: 5'- uGaGCGCGGCGGacgcgcaugcgcuggUCGUGaucGUCGCGGCa- -3' miRNA: 3'- gC-CGUGCUGCU---------------AGCAC---CAGCGCUGcc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 10649 | 0.69 | 0.556604 |
Target: 5'- gCGGUACGcugcggcuGCGcgCGgccGGUCGCGuCGGc -3' miRNA: 3'- -GCCGUGC--------UGCuaGCa--CCAGCGCuGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 10506 | 0.68 | 0.629691 |
Target: 5'- gCGGUcaGCGACGAUCucGGUCGUGuaACGa -3' miRNA: 3'- -GCCG--UGCUGCUAGcaCCAGCGC--UGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 8898 | 0.71 | 0.466787 |
Target: 5'- -cGCACGACGGUCcgcucuUGGgugCGCGGCGa -3' miRNA: 3'- gcCGUGCUGCUAGc-----ACCa--GCGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 7452 | 0.67 | 0.713099 |
Target: 5'- aCGGCcCGACcGUCGUGGcgacgccuaagCGCGGCu- -3' miRNA: 3'- -GCCGuGCUGcUAGCACCa----------GCGCUGcc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 6588 | 0.71 | 0.47642 |
Target: 5'- uCGGCGCGcUGAUCGUcgagcgGGUUGCGAacuucUGGg -3' miRNA: 3'- -GCCGUGCuGCUAGCA------CCAGCGCU-----GCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 5601 | 0.7 | 0.495976 |
Target: 5'- gGGCgACGACGAUCccgGUccGGUCGUcGCGGc -3' miRNA: 3'- gCCG-UGCUGCUAG---CA--CCAGCGcUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 5317 | 0.75 | 0.267514 |
Target: 5'- gCGGCgucgacgccACGGCGAUCGUgcaggauacgcccucGGUCGCGcCGGc -3' miRNA: 3'- -GCCG---------UGCUGCUAGCA---------------CCAGCGCuGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 5158 | 0.69 | 0.546326 |
Target: 5'- uCGGCGCGcUGAUCGgugacggccgGcGUCGCGggcGCGGg -3' miRNA: 3'- -GCCGUGCuGCUAGCa---------C-CAGCGC---UGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 5044 | 0.66 | 0.733417 |
Target: 5'- cCGGC-CGGCgccuGAUCGgcgGGcaggccCGCGGCGGc -3' miRNA: 3'- -GCCGuGCUG----CUAGCa--CCa-----GCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 4829 | 0.66 | 0.7233 |
Target: 5'- cCGGCGCGACGcagugccuuUCcgGUGGauucgcuugUCGCGGCGc -3' miRNA: 3'- -GCCGUGCUGCu--------AG--CACC---------AGCGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 1513 | 0.69 | 0.556604 |
Target: 5'- uGcGCuCGACGAagCGgccgcGGUCGUGGCGGa -3' miRNA: 3'- gC-CGuGCUGCUa-GCa----CCAGCGCUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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