miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 60119 0.68 0.61918
Target:  5'- gGGCACGAgGG-CGccaGcGUCGCGGCGa -3'
miRNA:   3'- gCCGUGCUgCUaGCa--C-CAGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 57461 0.7 0.525961
Target:  5'- gCGGCgGCGACGAUgGaGGUCGagGGCGa -3'
miRNA:   3'- -GCCG-UGCUGCUAgCaCCAGCg-CUGCc -5'
24054 5' -56.7 NC_005262.1 + 5158 0.69 0.546326
Target:  5'- uCGGCGCGcUGAUCGgugacggccgGcGUCGCGggcGCGGg -3'
miRNA:   3'- -GCCGUGCuGCUAGCa---------C-CAGCGC---UGCC- -5'
24054 5' -56.7 NC_005262.1 + 40352 0.69 0.546326
Target:  5'- cCGGCGCGcugauguCGAUCGUcGGcgaCGuCGACGGc -3'
miRNA:   3'- -GCCGUGCu------GCUAGCA-CCa--GC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 60408 0.69 0.566937
Target:  5'- gCGGCAUGGCGcaCGUGGUCGaGAUc- -3'
miRNA:   3'- -GCCGUGCUGCuaGCACCAGCgCUGcc -5'
24054 5' -56.7 NC_005262.1 + 32977 0.69 0.566937
Target:  5'- uCGGCGUGAaGAUCacGGUCGCGGCGc -3'
miRNA:   3'- -GCCGUGCUgCUAGcaCCAGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 56308 0.69 0.58774
Target:  5'- gCGGCuucgacaugaagGCGugGAUCGaaaagcgucUGGUCGagGGCGGc -3'
miRNA:   3'- -GCCG------------UGCugCUAGC---------ACCAGCg-CUGCC- -5'
24054 5' -56.7 NC_005262.1 + 42162 0.69 0.58774
Target:  5'- cCGGuCGCGGcCGAUCGUcuGUaCGUGAUGGg -3'
miRNA:   3'- -GCC-GUGCU-GCUAGCAc-CA-GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 48466 0.68 0.598196
Target:  5'- -cGCGCGgaucGCGAgccgCGUGGgcacgggcggCGCGACGGc -3'
miRNA:   3'- gcCGUGC----UGCUa---GCACCa---------GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 12318 0.7 0.525961
Target:  5'- aCGGCAUG-CGGcUCGUGccgcagcgCGCGGCGGc -3'
miRNA:   3'- -GCCGUGCuGCU-AGCACca------GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 31732 0.7 0.52495
Target:  5'- uCGGC-CGGCGGUCGcauGUCGCGcaagcgcACGGu -3'
miRNA:   3'- -GCCGuGCUGCUAGCac-CAGCGC-------UGCC- -5'
24054 5' -56.7 NC_005262.1 + 24291 0.7 0.515886
Target:  5'- uCGGCGCGACGcUCGccGcccugaugcuucUCGCGAUGGu -3'
miRNA:   3'- -GCCGUGCUGCuAGCacC------------AGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 33879 0.75 0.278107
Target:  5'- cCGcGCGCGAgaCGAUCGUGcGUCGgcCGGCGGc -3'
miRNA:   3'- -GC-CGUGCU--GCUAGCAC-CAGC--GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 32155 0.72 0.385049
Target:  5'- gCGGCACGugGAUCGacuuccagaaGG-CGgCGGCGGc -3'
miRNA:   3'- -GCCGUGCugCUAGCa---------CCaGC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 44154 0.72 0.393657
Target:  5'- aCGcGCGCG-CGAUCGggcaGGagCGCGGCGGc -3'
miRNA:   3'- -GC-CGUGCuGCUAGCa---CCa-GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 62766 0.72 0.402389
Target:  5'- uCGGCACGugGGUCGccagcgagGGauUCGCGccgaaaGCGGa -3'
miRNA:   3'- -GCCGUGCugCUAGCa-------CC--AGCGC------UGCC- -5'
24054 5' -56.7 NC_005262.1 + 27383 0.72 0.402389
Target:  5'- uCGGCGCcuccGCGAaCGUGGacuUCGgCGACGGg -3'
miRNA:   3'- -GCCGUGc---UGCUaGCACC---AGC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 51549 0.71 0.429306
Target:  5'- cCGGCuCG-CGuaccaCGUGGUCGCGcGCGGa -3'
miRNA:   3'- -GCCGuGCuGCua---GCACCAGCGC-UGCC- -5'
24054 5' -56.7 NC_005262.1 + 8898 0.71 0.466787
Target:  5'- -cGCACGACGGUCcgcucuUGGgugCGCGGCGa -3'
miRNA:   3'- gcCGUGCUGCUAGc-----ACCa--GCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 46735 0.7 0.509877
Target:  5'- cCGGCACGACcgGAUCGaucgccgccacgccGGUCGUacaGGCGGc -3'
miRNA:   3'- -GCCGUGCUG--CUAGCa-------------CCAGCG---CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.