miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 57461 0.7 0.525961
Target:  5'- gCGGCgGCGACGAUgGaGGUCGagGGCGa -3'
miRNA:   3'- -GCCG-UGCUGCUAgCaCCAGCg-CUGCc -5'
24054 5' -56.7 NC_005262.1 + 12318 0.7 0.525961
Target:  5'- aCGGCAUG-CGGcUCGUGccgcagcgCGCGGCGGc -3'
miRNA:   3'- -GCCGUGCuGCU-AGCACca------GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 48965 0.67 0.682102
Target:  5'- cCGGuCACGACG-UCGgacaGUUGCG-CGGg -3'
miRNA:   3'- -GCC-GUGCUGCuAGCac--CAGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 11490 0.67 0.671669
Target:  5'- cCGGCGCGGCGcggcuucggCGUGGagcCGCGcGCGa -3'
miRNA:   3'- -GCCGUGCUGCua-------GCACCa--GCGC-UGCc -5'
24054 5' -56.7 NC_005262.1 + 50453 0.67 0.671669
Target:  5'- aCGGU-CGACGAaugcgccgcUCGcGGUCGUcGCGGg -3'
miRNA:   3'- -GCCGuGCUGCU---------AGCaCCAGCGcUGCC- -5'
24054 5' -56.7 NC_005262.1 + 50352 0.67 0.671669
Target:  5'- cCGGCGCgGGCGcgCccucGUUGCGGCGGu -3'
miRNA:   3'- -GCCGUG-CUGCuaGcac-CAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 31315 0.67 0.661203
Target:  5'- gGGCGCGuCGAUCGacaGGcgCGCGAUc- -3'
miRNA:   3'- gCCGUGCuGCUAGCa--CCa-GCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 51964 0.68 0.640205
Target:  5'- gCGGCGuCGGCucGGUCGUGcUCGCGucguucGCGGc -3'
miRNA:   3'- -GCCGU-GCUG--CUAGCACcAGCGC------UGCC- -5'
24054 5' -56.7 NC_005262.1 + 48118 0.68 0.640205
Target:  5'- gGGCGCGGCcggcugcugcguGGUCuggguguUGGUCGCGGgGGu -3'
miRNA:   3'- gCCGUGCUG------------CUAGc------ACCAGCGCUgCC- -5'
24054 5' -56.7 NC_005262.1 + 10506 0.68 0.629691
Target:  5'- gCGGUcaGCGACGAUCucGGUCGUGuaACGa -3'
miRNA:   3'- -GCCG--UGCUGCUAGcaCCAGCGC--UGCc -5'
24054 5' -56.7 NC_005262.1 + 10917 0.67 0.696632
Target:  5'- uGaGCGCGGCGGacgcgcaugcgcuggUCGUGaucGUCGCGGCa- -3'
miRNA:   3'- gC-CGUGCUGCU---------------AGCAC---CAGCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 41484 0.67 0.702826
Target:  5'- cCGGCGcCGACGAUgaaGcGGUCGCGuaGGu -3'
miRNA:   3'- -GCCGU-GCUGCUAg--CaCCAGCGCugCC- -5'
24054 5' -56.7 NC_005262.1 + 46662 0.82 0.093456
Target:  5'- aCGGCGCuGGCG-UCGUGGUCGuCGugGGc -3'
miRNA:   3'- -GCCGUG-CUGCuAGCACCAGC-GCugCC- -5'
24054 5' -56.7 NC_005262.1 + 41287 0.66 0.753364
Target:  5'- aCGGUGCucgaaGCGGUCGccgGGcgcgcacgcgaUCGCGGCGGu -3'
miRNA:   3'- -GCCGUGc----UGCUAGCa--CC-----------AGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 49896 0.66 0.743442
Target:  5'- -cGCGCGGcCGAUCG-GGcCG-GACGGu -3'
miRNA:   3'- gcCGUGCU-GCUAGCaCCaGCgCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 48051 0.66 0.743442
Target:  5'- aGGCGCGAgaGGUCGU--UCGCGccuuCGGu -3'
miRNA:   3'- gCCGUGCUg-CUAGCAccAGCGCu---GCC- -5'
24054 5' -56.7 NC_005262.1 + 28815 0.66 0.733417
Target:  5'- aCGGCGuccgGGCGcgCGgccUCGCGGCGGa -3'
miRNA:   3'- -GCCGUg---CUGCuaGCaccAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 7452 0.67 0.713099
Target:  5'- aCGGCcCGACcGUCGUGGcgacgccuaagCGCGGCu- -3'
miRNA:   3'- -GCCGuGCUGcUAGCACCa----------GCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 12210 0.67 0.713099
Target:  5'- -aGCGCGGCGAUC-UGcUCGCGcgcACGGc -3'
miRNA:   3'- gcCGUGCUGCUAGcACcAGCGC---UGCC- -5'
24054 5' -56.7 NC_005262.1 + 53208 0.67 0.713099
Target:  5'- gCGGCAUcGCGGuuuUCGUGaaGUCGcCGACGa -3'
miRNA:   3'- -GCCGUGcUGCU---AGCAC--CAGC-GCUGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.