Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24054 | 5' | -56.7 | NC_005262.1 | + | 1513 | 0.69 | 0.556604 |
Target: 5'- uGcGCuCGACGAagCGgccgcGGUCGUGGCGGa -3' miRNA: 3'- gC-CGuGCUGCUa-GCa----CCAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 23375 | 0.68 | 0.629691 |
Target: 5'- uGGCgaACGACGGggcgggCGUGaagaaGCGACGGg -3' miRNA: 3'- gCCG--UGCUGCUa-----GCACcag--CGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 33461 | 0.68 | 0.629691 |
Target: 5'- gCGGCGuCGACGAUCacGG-C-CGGCGGg -3' miRNA: 3'- -GCCGU-GCUGCUAGcaCCaGcGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 41287 | 0.66 | 0.753364 |
Target: 5'- aCGGUGCucgaaGCGGUCGccgGGcgcgcacgcgaUCGCGGCGGu -3' miRNA: 3'- -GCCGUGc----UGCUAGCa--CC-----------AGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 49896 | 0.66 | 0.743442 |
Target: 5'- -cGCGCGGcCGAUCG-GGcCG-GACGGu -3' miRNA: 3'- gcCGUGCU-GCUAGCaCCaGCgCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 48051 | 0.66 | 0.743442 |
Target: 5'- aGGCGCGAgaGGUCGU--UCGCGccuuCGGu -3' miRNA: 3'- gCCGUGCUg-CUAGCAccAGCGCu---GCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 28815 | 0.66 | 0.733417 |
Target: 5'- aCGGCGuccgGGCGcgCGgccUCGCGGCGGa -3' miRNA: 3'- -GCCGUg---CUGCuaGCaccAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 7452 | 0.67 | 0.713099 |
Target: 5'- aCGGCcCGACcGUCGUGGcgacgccuaagCGCGGCu- -3' miRNA: 3'- -GCCGuGCUGcUAGCACCa----------GCGCUGcc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 12210 | 0.67 | 0.713099 |
Target: 5'- -aGCGCGGCGAUC-UGcUCGCGcgcACGGc -3' miRNA: 3'- gcCGUGCUGCUAGcACcAGCGC---UGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 53208 | 0.67 | 0.713099 |
Target: 5'- gCGGCAUcGCGGuuuUCGUGaaGUCGcCGACGa -3' miRNA: 3'- -GCCGUGcUGCU---AGCAC--CAGC-GCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 41484 | 0.67 | 0.702826 |
Target: 5'- cCGGCGcCGACGAUgaaGcGGUCGCGuaGGu -3' miRNA: 3'- -GCCGU-GCUGCUAg--CaCCAGCGCugCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 10917 | 0.67 | 0.696632 |
Target: 5'- uGaGCGCGGCGGacgcgcaugcgcuggUCGUGaucGUCGCGGCa- -3' miRNA: 3'- gC-CGUGCUGCU---------------AGCAC---CAGCGCUGcc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 48965 | 0.67 | 0.682102 |
Target: 5'- cCGGuCACGACG-UCGgacaGUUGCG-CGGg -3' miRNA: 3'- -GCC-GUGCUGCuAGCac--CAGCGCuGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 11490 | 0.67 | 0.671669 |
Target: 5'- cCGGCGCGGCGcggcuucggCGUGGagcCGCGcGCGa -3' miRNA: 3'- -GCCGUGCUGCua-------GCACCa--GCGC-UGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 50453 | 0.67 | 0.671669 |
Target: 5'- aCGGU-CGACGAaugcgccgcUCGcGGUCGUcGCGGg -3' miRNA: 3'- -GCCGuGCUGCU---------AGCaCCAGCGcUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 50352 | 0.67 | 0.671669 |
Target: 5'- cCGGCGCgGGCGcgCccucGUUGCGGCGGu -3' miRNA: 3'- -GCCGUG-CUGCuaGcac-CAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 31315 | 0.67 | 0.661203 |
Target: 5'- gGGCGCGuCGAUCGacaGGcgCGCGAUc- -3' miRNA: 3'- gCCGUGCuGCUAGCa--CCa-GCGCUGcc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 51964 | 0.68 | 0.640205 |
Target: 5'- gCGGCGuCGGCucGGUCGUGcUCGCGucguucGCGGc -3' miRNA: 3'- -GCCGU-GCUG--CUAGCACcAGCGC------UGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 48118 | 0.68 | 0.640205 |
Target: 5'- gGGCGCGGCcggcugcugcguGGUCuggguguUGGUCGCGGgGGu -3' miRNA: 3'- gCCGUGCUG------------CUAGc------ACCAGCGCUgCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 10506 | 0.68 | 0.629691 |
Target: 5'- gCGGUcaGCGACGAUCucGGUCGUGuaACGa -3' miRNA: 3'- -GCCG--UGCUGCUAGcaCCAGCGC--UGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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