miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 31315 0.67 0.661203
Target:  5'- gGGCGCGuCGAUCGacaGGcgCGCGAUc- -3'
miRNA:   3'- gCCGUGCuGCUAGCa--CCa-GCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 48051 0.66 0.743442
Target:  5'- aGGCGCGAgaGGUCGU--UCGCGccuuCGGu -3'
miRNA:   3'- gCCGUGCUg-CUAGCAccAGCGCu---GCC- -5'
24054 5' -56.7 NC_005262.1 + 50520 0.75 0.271448
Target:  5'- gCGGCACGACGA-CGUGcaCGCGGCc- -3'
miRNA:   3'- -GCCGUGCUGCUaGCACcaGCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 59095 0.7 0.486151
Target:  5'- gCGGCuugcaGACGGUCGaag-CGCGACGGc -3'
miRNA:   3'- -GCCGug---CUGCUAGCaccaGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 10506 0.68 0.629691
Target:  5'- gCGGUcaGCGACGAUCucGGUCGUGuaACGa -3'
miRNA:   3'- -GCCG--UGCUGCUAGcaCCAGCGC--UGCc -5'
24054 5' -56.7 NC_005262.1 + 49896 0.66 0.743442
Target:  5'- -cGCGCGGcCGAUCG-GGcCG-GACGGu -3'
miRNA:   3'- gcCGUGCU-GCUAGCaCCaGCgCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 20199 0.7 0.495976
Target:  5'- gGGCAUGACGugaacaaagaaAUCaaGGUCGaCGGCGGc -3'
miRNA:   3'- gCCGUGCUGC-----------UAGcaCCAGC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 41287 0.66 0.753364
Target:  5'- aCGGUGCucgaaGCGGUCGccgGGcgcgcacgcgaUCGCGGCGGu -3'
miRNA:   3'- -GCCGUGc----UGCUAGCa--CC-----------AGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 29757 0.66 0.763174
Target:  5'- gGGUugGGCGGgcugCGcGGgCGCgGGCGGc -3'
miRNA:   3'- gCCGugCUGCUa---GCaCCaGCG-CUGCC- -5'
24054 5' -56.7 NC_005262.1 + 48965 0.67 0.682102
Target:  5'- cCGGuCACGACG-UCGgacaGUUGCG-CGGg -3'
miRNA:   3'- -GCC-GUGCUGCuAGCac--CAGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 33461 0.68 0.629691
Target:  5'- gCGGCGuCGACGAUCacGG-C-CGGCGGg -3'
miRNA:   3'- -GCCGU-GCUGCUAGcaCCaGcGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 46662 0.82 0.093456
Target:  5'- aCGGCGCuGGCG-UCGUGGUCGuCGugGGc -3'
miRNA:   3'- -GCCGUG-CUGCuAGCACCAGC-GCugCC- -5'
24054 5' -56.7 NC_005262.1 + 647 0.69 0.546326
Target:  5'- gCGGUugGGCGAgc--GGUCGCGcACGa -3'
miRNA:   3'- -GCCGugCUGCUagcaCCAGCGC-UGCc -5'
24054 5' -56.7 NC_005262.1 + 6588 0.71 0.47642
Target:  5'- uCGGCGCGcUGAUCGUcgagcgGGUUGCGAacuucUGGg -3'
miRNA:   3'- -GCCGUGCuGCUAGCA------CCAGCGCU-----GCC- -5'
24054 5' -56.7 NC_005262.1 + 46542 0.73 0.367383
Target:  5'- cCGGCGCGGCauUCG-GGUCcggcgcgggcggcGCGGCGGg -3'
miRNA:   3'- -GCCGUGCUGcuAGCaCCAG-------------CGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 5317 0.75 0.267514
Target:  5'- gCGGCgucgacgccACGGCGAUCGUgcaggauacgcccucGGUCGCGcCGGc -3'
miRNA:   3'- -GCCG---------UGCUGCUAGCA---------------CCAGCGCuGCC- -5'
24054 5' -56.7 NC_005262.1 + 11490 0.67 0.671669
Target:  5'- cCGGCGCGGCGcggcuucggCGUGGagcCGCGcGCGa -3'
miRNA:   3'- -GCCGUGCUGCua-------GCACCa--GCGC-UGCc -5'
24054 5' -56.7 NC_005262.1 + 28815 0.66 0.733417
Target:  5'- aCGGCGuccgGGCGcgCGgccUCGCGGCGGa -3'
miRNA:   3'- -GCCGUg---CUGCuaGCaccAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 53208 0.67 0.713099
Target:  5'- gCGGCAUcGCGGuuuUCGUGaaGUCGcCGACGa -3'
miRNA:   3'- -GCCGUGcUGCU---AGCAC--CAGC-GCUGCc -5'
24054 5' -56.7 NC_005262.1 + 12525 0.67 0.670624
Target:  5'- -cGCGCGACGcgaucgccuccauGUUGcggcggcaGGUCGCGGCGGc -3'
miRNA:   3'- gcCGUGCUGC-------------UAGCa-------CCAGCGCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.