miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24054 5' -56.7 NC_005262.1 + 10978 0.68 0.650712
Target:  5'- uCGGCGCGcCGGgaaCGccGGUCGCGcucgcACGGc -3'
miRNA:   3'- -GCCGUGCuGCUa--GCa-CCAGCGC-----UGCC- -5'
24054 5' -56.7 NC_005262.1 + 17539 0.67 0.671669
Target:  5'- gGGCACG-CGGUCGcgcgcgaggcGGcagcCGCGGCGGc -3'
miRNA:   3'- gCCGUGCuGCUAGCa---------CCa---GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 51549 0.71 0.429306
Target:  5'- cCGGCuCG-CGuaccaCGUGGUCGCGcGCGGa -3'
miRNA:   3'- -GCCGuGCuGCua---GCACCAGCGC-UGCC- -5'
24054 5' -56.7 NC_005262.1 + 27383 0.72 0.402389
Target:  5'- uCGGCGCcuccGCGAaCGUGGacuUCGgCGACGGg -3'
miRNA:   3'- -GCCGUGc---UGCUaGCACC---AGC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 12525 0.67 0.670624
Target:  5'- -cGCGCGACGcgaucgccuccauGUUGcggcggcaGGUCGCGGCGGc -3'
miRNA:   3'- gcCGUGCUGC-------------UAGCa-------CCAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 52034 0.67 0.670624
Target:  5'- aCGGCAUGACGAUCGccGG-CGCcuacaucGAgucCGGg -3'
miRNA:   3'- -GCCGUGCUGCUAGCa-CCaGCG-------CU---GCC- -5'
24054 5' -56.7 NC_005262.1 + 32155 0.72 0.385049
Target:  5'- gCGGCACGugGAUCGacuuccagaaGG-CGgCGGCGGc -3'
miRNA:   3'- -GCCGUGCugCUAGCa---------CCaGC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 55038 0.67 0.661203
Target:  5'- gGGCAaGACGuucaCGaUGaUCGCGACGGg -3'
miRNA:   3'- gCCGUgCUGCua--GC-ACcAGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 61132 0.68 0.640205
Target:  5'- aCGGUguACGACGcgC-UGGcgcagcagaUCGCGGCGGc -3'
miRNA:   3'- -GCCG--UGCUGCuaGcACC---------AGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 31732 0.7 0.52495
Target:  5'- uCGGC-CGGCGGUCGcauGUCGCGcaagcgcACGGu -3'
miRNA:   3'- -GCCGuGCUGCUAGCac-CAGCGC-------UGCC- -5'
24054 5' -56.7 NC_005262.1 + 12318 0.7 0.525961
Target:  5'- aCGGCAUG-CGGcUCGUGccgcagcgCGCGGCGGc -3'
miRNA:   3'- -GCCGUGCuGCU-AGCACca------GCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 59590 0.66 0.743442
Target:  5'- uCGcGCGCGAcuaCGAUcaggcCGUGGUCGUGgGCGa -3'
miRNA:   3'- -GC-CGUGCU---GCUA-----GCACCAGCGC-UGCc -5'
24054 5' -56.7 NC_005262.1 + 23706 0.66 0.753364
Target:  5'- cCGGCGC-ACGGUCGaccaCGCGGCGa -3'
miRNA:   3'- -GCCGUGcUGCUAGCaccaGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 55165 0.66 0.763174
Target:  5'- cCGGcCGCGAacAUCaUGGUCGCgGACGa -3'
miRNA:   3'- -GCC-GUGCUgcUAGcACCAGCG-CUGCc -5'
24054 5' -56.7 NC_005262.1 + 60119 0.68 0.61918
Target:  5'- gGGCACGAgGG-CGccaGcGUCGCGGCGa -3'
miRNA:   3'- gCCGUGCUgCUaGCa--C-CAGCGCUGCc -5'
24054 5' -56.7 NC_005262.1 + 12935 0.68 0.629691
Target:  5'- gCGGCGCGcUGAagggCGUG--CGCGACGGc -3'
miRNA:   3'- -GCCGUGCuGCUa---GCACcaGCGCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 19409 0.68 0.640205
Target:  5'- aGGCugGAUGAaUGUGcccccgcaGUCGCGGCa- -3'
miRNA:   3'- gCCGugCUGCUaGCAC--------CAGCGCUGcc -5'
24054 5' -56.7 NC_005262.1 + 40352 0.69 0.546326
Target:  5'- cCGGCGCGcugauguCGAUCGUcGGcgaCGuCGACGGc -3'
miRNA:   3'- -GCCGUGCu------GCUAGCA-CCa--GC-GCUGCC- -5'
24054 5' -56.7 NC_005262.1 + 5158 0.69 0.546326
Target:  5'- uCGGCGCGcUGAUCGgugacggccgGcGUCGCGggcGCGGg -3'
miRNA:   3'- -GCCGUGCuGCUAGCa---------C-CAGCGC---UGCC- -5'
24054 5' -56.7 NC_005262.1 + 57461 0.7 0.525961
Target:  5'- gCGGCgGCGACGAUgGaGGUCGagGGCGa -3'
miRNA:   3'- -GCCG-UGCUGCUAgCaCCAGCg-CUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.