Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24054 | 5' | -56.7 | NC_005262.1 | + | 48466 | 0.68 | 0.598196 |
Target: 5'- -cGCGCGgaucGCGAgccgCGUGGgcacgggcggCGCGACGGc -3' miRNA: 3'- gcCGUGC----UGCUa---GCACCa---------GCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 60119 | 0.68 | 0.61918 |
Target: 5'- gGGCACGAgGG-CGccaGcGUCGCGGCGa -3' miRNA: 3'- gCCGUGCUgCUaGCa--C-CAGCGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 12935 | 0.68 | 0.629691 |
Target: 5'- gCGGCGCGcUGAagggCGUG--CGCGACGGc -3' miRNA: 3'- -GCCGUGCuGCUa---GCACcaGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 59590 | 0.66 | 0.743442 |
Target: 5'- uCGcGCGCGAcuaCGAUcaggcCGUGGUCGUGgGCGa -3' miRNA: 3'- -GC-CGUGCU---GCUA-----GCACCAGCGC-UGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 55641 | 0.66 | 0.743442 |
Target: 5'- gGGcCGCG-CGcUCGUGGcCGCGucCGGc -3' miRNA: 3'- gCC-GUGCuGCuAGCACCaGCGCu-GCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 5044 | 0.66 | 0.733417 |
Target: 5'- cCGGC-CGGCgccuGAUCGgcgGGcaggccCGCGGCGGc -3' miRNA: 3'- -GCCGuGCUG----CUAGCa--CCa-----GCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 4829 | 0.66 | 0.7233 |
Target: 5'- cCGGCGCGACGcagugccuuUCcgGUGGauucgcuugUCGCGGCGc -3' miRNA: 3'- -GCCGUGCUGCu--------AG--CACC---------AGCGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 58484 | 0.67 | 0.713099 |
Target: 5'- aCGGCACGAUccAUC-UGGUaGCGGCGa -3' miRNA: 3'- -GCCGUGCUGc-UAGcACCAgCGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 28210 | 0.67 | 0.713099 |
Target: 5'- gGGCAcCGACGAcaUCGacGGcgaugaCGCGAUGGa -3' miRNA: 3'- gCCGU-GCUGCU--AGCa-CCa-----GCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 12017 | 0.67 | 0.713099 |
Target: 5'- -uGCACGGCGcaAUC-UGGUCGCGcGCGu -3' miRNA: 3'- gcCGUGCUGC--UAGcACCAGCGC-UGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 60613 | 0.67 | 0.702826 |
Target: 5'- gGGCACGGCGAaCGccaugcgcacgcUGGcgaGCGGCGa -3' miRNA: 3'- gCCGUGCUGCUaGC------------ACCag-CGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 60836 | 0.67 | 0.671669 |
Target: 5'- cCGGCcuACG-CGAUCG-GcGUgGCGAUGGc -3' miRNA: 3'- -GCCG--UGCuGCUAGCaC-CAgCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 12525 | 0.67 | 0.670624 |
Target: 5'- -cGCGCGACGcgaucgccuccauGUUGcggcggcaGGUCGCGGCGGc -3' miRNA: 3'- gcCGUGCUGC-------------UAGCa-------CCAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 52034 | 0.67 | 0.670624 |
Target: 5'- aCGGCAUGACGAUCGccGG-CGCcuacaucGAgucCGGg -3' miRNA: 3'- -GCCGUGCUGCUAGCa-CCaGCG-------CU---GCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 55038 | 0.67 | 0.661203 |
Target: 5'- gGGCAaGACGuucaCGaUGaUCGCGACGGg -3' miRNA: 3'- gCCGUgCUGCua--GC-ACcAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 14212 | 0.67 | 0.661203 |
Target: 5'- gCGGCACuGACGG-CG-GG-CGCGAUGu -3' miRNA: 3'- -GCCGUG-CUGCUaGCaCCaGCGCUGCc -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 10978 | 0.68 | 0.650712 |
Target: 5'- uCGGCGCGcCGGgaaCGccGGUCGCGcucgcACGGc -3' miRNA: 3'- -GCCGUGCuGCUa--GCa-CCAGCGC-----UGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 33917 | 0.68 | 0.640205 |
Target: 5'- uCGGUAgCGGCGGUgcCGaGcUCGCGGCGGg -3' miRNA: 3'- -GCCGU-GCUGCUA--GCaCcAGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 61132 | 0.68 | 0.640205 |
Target: 5'- aCGGUguACGACGcgC-UGGcgcagcagaUCGCGGCGGc -3' miRNA: 3'- -GCCG--UGCUGCuaGcACC---------AGCGCUGCC- -5' |
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24054 | 5' | -56.7 | NC_005262.1 | + | 19409 | 0.68 | 0.640205 |
Target: 5'- aGGCugGAUGAaUGUGcccccgcaGUCGCGGCa- -3' miRNA: 3'- gCCGugCUGCUaGCAC--------CAGCGCUGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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